Comparative genomics of translational regulation 

Identification and analysis of shared epigenetic changes in extraembryonic development and tumorigenesis 

Genome-wide studies reveal the isoform selection of genes 

Improved methods for the quantification of transcription factor binding using SELEX-seq 

Probabilistic modeling and data integration to examine RNA-protein interactions 

DNA shape at transcription factor binding sites: from purifying selection to a new alphabet 

Model selection methods for genome wide association studies and statistical analysis of RNA seq data 

Benchmarking of computational tools for ancestry prediction using RNA-seq data 

Best practice development for RNA-Seq analysis of complex disorders, with applications in schizophrenia 

Orthogonal shared basis factorization: cross-species gene expression analysis using a common expression subspace 

Efficient short-read sequencing on long-read sequencers 

Detection, classification and functional annotation of mouse L1 retrotransposon promoters 

Malignant cell fraction prediction using deep learning: from point estimate to uncertainty quantification 

Developing and benchmarking computational tools to facilitate T cell receptor repertoire analysis 

Genome-wide studies of protein–DNA binding: beyond sequence towards biophysical and physicochemical models 

Identifying allele-specific DNA methylation in mammalian genomes 

Predicting functional consequences of SNPs: insights from translation elongation, molecular phenotypes, and pathways 

Essays on bioinformatics and social network analysis: statistical and computational methods for complex systems 

Computational tools for large-scale analysis of brain function and structure 

Deciphering protein-nucleic acid interactions with artificial intelligence