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Assessment of myocardial blood flow in humans using arterial spin labeled MRI
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Assessment of myocardial blood flow in humans using arterial spin labeled MRI
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ASSESSMENT OF MYOCARDIAL BLOOD FLOW IN HUMANS USING
ARTERIAL SPIN LABELED MRI
by
Zungho Zun
A Dissertation Presented to the
FACULTY OF THE USC GRADUATE SCHOOL
UNIVERSITY OF SOUTHERN CALIFORNIA
In Partial Fulfillment of the
Requirements for the Degree
DOCTOR OF PHILOSOPHY
(ELECTRICAL ENGINEERING)
December 2010
Copyright 2010 Zungho Zun
ii
Acknowledgements
I am grateful for the support of as many people as were the days I spent pursuing this PhD degree.
I am most grateful to my adviser Professor Krishna Nayak and his Magnetic Resonance
Engineering Laboratory (MREL). If it was not for him, I would not have had a chance to learn
MRI, a field which I now truly enjoy working on and which I feel is the area of study that best
suits me. Krishna has also been the best adviser I could possibly have wished for to guide me
through my PhD dissertation. I truly learned a lot from him about how to approach research in a
science-oriented manner and tackle research problems step by step. Now I am graduating and
moving to a new place for the next level of my career, but I will always be proud that I am from
his laboratory.
I have also been fortunate to work with Professor Eric Wong at UC San Diego. It has
been a great honor to collaborate with someone who is a guru in one topic. He has amazed me
with his hard work and noble ideas on research and is a great role model for me to follow. I am
also grateful for his time and effort during his multiple visits to USC and our many phone
discussions.
iii
I would like to thank Dr. Ramdas Pai and Dr. Padmini Varadarajan for being always
supportive of our clinical studies at Loma Linda University Hospital as well as providing
invaluable suggestions. I thank Dr. Gerald Pohost for his clinical advice on my project. I thank Dr.
Houchun Harry Hu for numerous times of assistance. He has been helpful for almost everything
from volunteering to giving advice on my academic path.
I should not forget to express my gratitude to my previous and present labmates at
MREL because it always makes me smile when I look back on memories of them. In particular,
Dr. Taehoon Shin was a good labmate who not only shared an office with me for many years, but
also shared many research/fun activities. I thank Mahender Makhijani, Yoon-Chul Kim, Travis
Smith, Samir Sharrma, and all the junior students for being friendly and helpful.
Lastly, my deep gratitude goes to my family for their endless love and support. Mom
and Dad were always supportive and on my side from the moment I decided to study in USA. My
three sisters have cared about me and have given me strength by believing in me. I am also
grateful to my fiancé Eun Kyung, soon-to-be my family. She has brought me spiritual peace
during the last part of my PhD years.
iv
Table of Contents
Acknowledgements ii
List of Tables vii
List of Figures viii
Abstract xii
1 Introduction 1
1.1 Organization of This Dissertation ......................................................................... 3
2 Background 5
2.1 MRI Physics .......................................................................................................... 5
2.1.1 Nuclear Magnetic Resonance ..................................................................... 5
2.1.2 Excitation .................................................................................................... 8
2.1.3 Relaxation ................................................................................................. 12
2.2 Myocardial Perfusion .......................................................................................... 14
2.2.1 Coronary Artery Disease .......................................................................... 14
2.2.2 Myocardial Perfusion Imaging ................................................................. 16
2.3 Arterial Spin Labeled MRI ................................................................................. 17
2.3.1 Basic Concepts ......................................................................................... 17
2.3.2 Pre-clinical Applications .......................................................................... 20
2.4 Myocardial ASL.................................................................................................. 21
2.4.1 Unique Challenges for ASL in the Heart.................................................. 21
2.4.2 Cardiac Physiology ................................................................................... 22
2.4.3 Myocardial ASL in Animals .................................................................... 23
2.4.4 Previous Studies on Myocardial ASL in Humans .................................... 24
2.4.5 Myocardial ASL at 3 Tesla ....................................................................... 25
3 Graphical Analysis of Balanced Steady-state Free Precession 27
3.1 Matrix Analysis ................................................................................................... 29
3.2 Graphical Analysis .............................................................................................. 32
3.2.1 On-resonance ............................................................................................ 32
3.2.2 Off-resonance ........................................................................................... 36
3.3 Discussion ........................................................................................................... 39
v
4 Feasibility of Myocardial Arterial Spin Labeling in Humans 42
4.1 Methods .............................................................................................................. 43
4.1.1 Pulse Sequence ......................................................................................... 43
4.1.2 Reconstruction .......................................................................................... 45
4.1.3 Quantification ........................................................................................... 46
4.1.4 Noise Analysis .......................................................................................... 46
4.1.5 Experimental Methods.............................................................................. 49
4.2 Results ................................................................................................................. 50
4.2.1 Resting MBF ............................................................................................ 50
4.2.2 Dependence on Inflow .............................................................................. 54
4.2.3 Modulation with Mild Stress .................................................................... 55
4.3 Discussion ........................................................................................................... 56
5 Measurement of Changes in Myocardial Perfusion with Vasodilatation 62
5.1 Methods .............................................................................................................. 63
5.1.1 Study Design ............................................................................................ 63
5.1.2 Imaging Methods ...................................................................................... 65
5.1.3 Data Analysis ........................................................................................... 66
5.2 Results ................................................................................................................. 67
5.2.1 Normal Subjects ....................................................................................... 67
5.2.2 Comparison of Normal and Ischemic Segments ...................................... 69
5.2.3 Subjects with Single-vessel Disease ......................................................... 70
5.3 Discussion ........................................................................................................... 72
6 Attempts to Reduce Physiological Noise 76
6.1 Myocardial Background Suppression ................................................................. 77
6.1.1 Methods .................................................................................................... 77
6.1.2 Results ...................................................................................................... 78
6.1.3 Discussion ................................................................................................ 79
6.2 Blood Pool Signal Suppression Using Pulsed 2D Tagging ................................ 80
6.2.1 Methods .................................................................................................... 80
6.2.2 Results ...................................................................................................... 83
6.2.3 Discussion ................................................................................................ 84
6.3 Breath-hold Duration Reduction Using Pre-saturation ....................................... 85
6.3.1 Methods and Results ................................................................................ 85
6.3.2 Discussion ................................................................................................ 88
vi
7 Summary and Future Work 89
7.1 Summary ............................................................................................................. 89
7.2 Future Work ........................................................................................................ 90
7.2.1 Extended Spatial Coverage ....................................................................... 90
7.2.2 Systolic Imaging ....................................................................................... 91
7.2.3 Other Tagging Methods ............................................................................ 91
7.2.4 Cross-validation with Other Modalities ................................................... 92
References 94
vii
List of Tables
4.1. MBF measurements in healthy volunteers at rest. Columns contain the measured
MBF, SNR, size of the septal ROI, standard deviation of measured MBF, and
confidence (probability of measured MBF error being < 0.1 ml/g/min) from
fifteen scans of healthy subjects. Data are sorted in ascending order according to
measured MBF. ............................................................................................................. 52
4.2. MBF measurements (in ml/g/min) with different slab-selective inversion
thicknesses (3 cm for slice, 12 cm for LV, and nonselective for everything). .............. 55
4.3. MBF measurements (in ml/g/min) at rest, with passive leg elevation, and with
isometric handgrip exercise, and heart rates (HR, in bpm) for each study. The
average heart rate change from rest was -1% with leg elevation and 0.3% with
handgrip. ........................................................................................................................ 56
5.1. Comparison of normal myocardial segments from the normal patients and the
most ischemic myocardial segments from the patients with angiographically-
significant CAD. *The difference in perfusion reserve between normal and
ischemic segments was statistically significant (p=0.0419), based on Student’s
unpaired t-test. ............................................................................................................... 70
6.1. Average myocardial signal on control and tagged images with respect to
equilibrium signal, MBF estimate (in ml/g/min), and standard deviation of
physiological noise (in ml/g/min). ................................................................................ 79
6.2. Inversion efficiency across the proximal aorta, residual LV signal ((C-T)/C on LV
blood), MBF measurements (in ml/g/min), and SD of physiological noise (in
ml/g/min) for 1D and 2D tagging schemes. .................................................................. 84
6.3. MBF measurements and SD of physiological noise using FAIR with T
delay
= 6 sec
and FAIRER with T
delay
= 0 sec (in ml/g/min). ............................................................. 87
viii
List of Figures
2.1. Polarization of magnetic spins. Left: Spins are randomly oriented under normal
condition. Right: With the external magnetic field B
0
, two effects occur; (1)
spins are aligned with the direction of B
0
, (2) spins exhibit resonance around B
0
at a known resonance frequency. .................................................................................... 6
2.2. Illustration of magnetization. Magnetization is aligned with B
0
at equilibrium and
rotates around B
0
based on left hand rule. When thumb points in the magnetic
field direction, the fingers point in the precession direction. .......................................... 7
2.3. Magnetization excitation viewed in the rotating frame. The direction of rotation
caused by B
1
can be found using the same left hand rule as used with B
0
. ..................... 8
2.4. Illustration of 90° excitation and 180° excitation (or inversion). B
1
determines the
flip-angle of excitation. ................................................................................................... 9
2.5. Illustration of adiabatic excitation for 180° flip-angle (inversion). Magnetization
is effectively locked to B
eff
by rapid rotation around it, and follows the passage of
B
eff
. ................................................................................................................................ 11
2.6. Relaxation behavior of longitudinal and transverse components of magnetization
in blood and myocardium after 90° excitation. T
1
/T
2
of the blood and
myocardium are known to be 1512 ms/141 ms and 1115 ms/41 ms at 3T,
respectively [7]. ............................................................................................................. 13
2.7. Illustration of narrowing of the coronary vessels due to accumulation of plaques
within the vessel walls. .................................................................................................. 15
2.8. Examples of myocardial perfusion imaging with (A) SPECT and (B) PET [41]. ......... 17
2.9. Generic diagram for ASL. ASL image is the difference of tagged (image with
tagging) and control (image without tagging) images (figure courtesy of Eric
Wong). ........................................................................................................................... 19
ix
2.10. Illustration of arterial blood magnetization in control and tagged images as a
function of time. ............................................................................................................ 20
2.11. Example ASL images from brain (A), lung (B), lower legs (C) (courtesy of Eric
Wong), and kidney (D) [25]. ......................................................................................... 21
3.1. Alternating balanced SSFP profiles according to different flip angles for
T
1
/T
2
=1000ms/300ms. θ denotes off-resonance precession within TR. In the
steady state, M
5
=M
1
. ..................................................................................................... 28
3.2. RF sequence of alternating balanced SSFP. M
X
’s denote the vector magnetization
right before or after the excitation. In the steady state, M
5
=M
1
. ................................... 31
3.3. Steady-state magnetizations of alternating balanced SSFP on resonance with
exaggerated relaxation. Symmetry about z-axis requires that the four
magnetization vectors have the same magnitude, which means that ( ΔM
XY
, ΔM
Z
)
from relaxation must be perpendicular to the magnetization position vector (M
XY
,
M
Z
). ............................................................................................................................... 33
3.4. Magnetization (M
XY
, M
Z
) in the steady state as a function of α. When
magnetization reaches the rightmost point of the ellipse, the greatest transverse
signal is produced. ......................................................................................................... 35
3.5. Balanced SSFP with off-resonance precession in the steady state. Solid and dotted
arrows denote precession and instant excitation respectively. a: Magnetizations
immediately before and after RF pulse. b: Magnetizations at TE=TR/2. The
effective flip angle α′ is equivalent to the sum of two angles that each
magnetization in a forms with z-axis. ........................................................................... 37
3.6. Effective flip angle, magnetization at echo time, and steady-state signal as a
function of prescribed flip angle and off-resonance θ. For α=10 ° (top row),
α=40 ° (middle row), and α=140 ° (bottom row), the figures show how the
effective flip angle, M(TE), and transverse component profile are related as off-
resonance changes. T
1
=1000ms, T
2
=300ms, and TE=TR/2. ......................................... 38
3.7. Signal profile based on graphical derivation or simulation with approximation (a)
and the simulation without approximation (b) for extremely small flip angle.
According to the exact simulation, one peak is observed at θ=180 ° instead of two
peaks. ............................................................................................................................. 41
x
4.1. Myocardial ASL pulse sequence. Tagging and imaging are both centered at mid-
diastole. Using Flow-induced Alternating Inversion Recovery (FAIR),
preparatory inversion pulses are either slab-selective or non-selective to generate
control or tagged images, respectively. Imaging is performed using a snapshot
balanced steady-state free precession (SSFP) sequence that is preceded by fat
saturation, to reduce signal from epicardial fat, and a 5-tip linear ramp
preparation, to minimize transient signal oscillations. During each breath-hold,
one control image and one tagged image are acquired with a 6-second pause in
between. ........................................................................................................................ 44
4.2. Measured resting MBF as a function of the number of voxels averaged. Roughly
80 voxels were segmented for each breath-hold, resulting in a measurement of
0.70 ml/g/min based on 6 breath-holds (right-most data point). All other data
points were simulated by considering subsets of the 6 breath-holds. ............................ 53
4.3. Six MBF measurements averaged for each breath-hold with alternating
control/tagging image order. The solid line in the middle corresponds to the MBF
value averaged over all voxels from six breath-holds (0.70 ml/g/min), and two
dotted lines represent estimated upper (0.70+0.24 ml/g/min) and lower (0.70-0.24
ml/g/min) bounds of signal deviation due to incomplete static tissue relaxation. ......... 54
5.1. Modified stress CMR protocol. Myocardial ASL scans are performed at rest and
during adenosine infusion, both prior to first-pass imaging to avoid confounding
effects of the contrast agent (lowering the blood T
1
). The CMR protocol after
completion of adenosine infusion is unchanged and includes viability and
function imaging. .......................................................................................................... 64
5.2. MBF estimates at rest (blue) and during adenosine infusion (purple), in eleven
patients with no significant perfusion defect on first-pass imaging, and no
significant disease on coronary angiography. The average MBF was 1.09 ± 0.70
ml/g/min at rest and 3.92 ± 1.08 ml/g/min with adenosine, yielding an average
perfusion reserve (MBF
stress
/MBF
rest
) of 4.29. This increase in MBF was found to
be statistically significant based on Student’s paired t-test (p=0.00002). Error
bars represent plus or minus one standard deviation of the measured
physiological noise. The average physiological noise during adenosine infusion
was 2.6 times larger than the average physiological noise at rest. ................................ 68
xi
5.3. Myocardial ASL perfusion reserve maps and X-ray angiograms from the first two
patients with single-vessel CAD. A, B: patient with total LAD occlusion, C, D:
patient with total RCA occlusion. Myocardial regions with lowered perfusion
reserve are consistent with the territories of occluded vessels (see arrows). ................ 71
5.4. Standard deviation of physiological noise as a function of ROI size, averaged
across 19 patients in resting scans. If physiological noise was not spatially
correlated at all, the standard deviation should be inversely proportional to the
square root of ROI size (as indicated by “Reference”). ................................................ 74
6.1. Cardiac gated FAIR – SSFP pulse sequences A: without and B: with myocardial
BGS. .............................................................................................................................. 78
6.2. 2D selective adiabatic inversion pulse. (23 ms duration, 0.16 G peak B
1
+). ................. 82
6.3. Cardiac gated “pulsed” myocardial ASL sequence. ...................................................... 82
6.4. In-vivo tag profiles for A: 1D tagging and B: 2D tagging of the proximal aorta.
Identically windowed difference images for C: 1D tagging and D: 2D tagging. .......... 83
6.5. Myocardial ASL pulse sequence of FAIR or FAIRER in each breath-hold.
Control and tagged imaging are separated by T
delay
. ..................................................... 86
6.6. MBF error due to imperfect static tissue subtraction as a function of time delay
between control and tagged imaging. ............................................................................ 87
xii
Abstract
Magnetic resonance imaging (MRI) is a powerful imaging modality that is both non-invasive and
non-ionizing. MRI can be used to facilitate the evaluation of coronary artery disease (CAD),
which is a leading cause of death worldwide. In particular, MRI-based first-pass techniques
provide assessment of myocardial perfusion with high resolution in detection of CAD.
Myocardial perfusion reflects the rate of blood delivery to tissue and is a powerful indicator of
tissue health. However, these first-pass methods require the use of contrast agent which cannot be
applied to the patients with end-stage renal disease (ESRD). This dissertation contributes a new
method for measuring myocardial perfusion without contrast agent, using arterial spin labeled
(ASL) MRI.
Firstly, a graphical analysis of balanced steady-state free precession (SSFP) is presented.
Balanced SSFP is an imaging sequence that provides high signal-to-noise ratio (SNR) efficiency.
Because ASL-based perfusion imaging typically suffers from low intrinsic SNR, balanced SSFP
was adopted as our proposed imaging sequence though this dissertation. The graphical approach
provides an intuition for understanding balanced SSFP.
xiii
Secondly, the feasibility of myocardial perfusion imaging using ASL (or myocardial
ASL) is demonstrated in healthy volunteers. It is shown that myocardial ASL measurements are
consistent with previous published literature values of perfusion using positron emission
tomography (PET), are inflow-dependent, and increase with mild stress. In addition, analysis of
noise is presented to assess its impact on ASL measurement error.
Thirdly, the potential of myocardial ASL to detect angiographically significant CAD is
demonstrated in patients. The perfusion reserve index is defined as the rate of perfusion during
stress divided by that at rest. It is a measure of the severity of CAD. This study performed rest-
stress myocardial ASL scans using vasodilator in patients with suspected CAD. Measured
perfusion in normal myocardial segments increased by a factor of four during stress, matching
literature values based on PET. There was also a statistically significant difference in perfusion
reserve between normal and the most ischemic myocardial segments, which suggests that
myocardial ASL may be capable of detecting CAD.
Lastly, three attempts to improve measurement confidence in myocardial ASL are
described. Three potential sources of measurement noise are identified and a relevant solution to
each noise source is presented. Physiological noise is measured with and without the solution and
statically significant reduction is examined.
1
Chapter 1
Introduction
Magnetic resonance imaging (MRI) is a powerful imaging modality because it is non-invasive
and utilizes no ionizing radiation. MRI provides structural imaging with excellent soft tissue
contrast and high spatial resolution. It can also provide functional measurements such as blood
flow, blood oxygenation, diffusion of water molecules, and chemical composition.
Coronary artery disease (CAD) is a leading cause in the world. In USA alone, half a
million people die due to CAD annually. Additionally, more than 10 million single-photon
emission computed tomography (SPECT) scans are performed for myocardial perfusion imaging
(MPI) each year. In the diagnosis of CAD, MPI plays an important role by measuring blood flow
in heart muscle (myocardium). MPI is typically performed using SPECT or positron emission
tomography (PET); however they are both expensive, involve exposure to ionizing radiation, and
provide low spatial resolution. MRI-based first-pass methods allow for MPI without radiation and
with high spatial resolution. While these techniques are promising and becoming widely-used,
2
they require the use of contrast agents. This limits the repeated or real-time scanning, and more
importantly, it is not applicable to patients with renal failure.
Arterial spin labeling (ASL) is an MRI-based method that can quantitatively measure
tissue blood flow without contrast agent. ASL applied to myocardial perfusion has several
potential advantages over contrast-based MPI methods. First, the ASL signal is directly
proportional to tissue blood flow, and therefore quantitation of myocardial blood flow (MBF)
should come more naturally. This has the potential to reduce the problem of inter-observer
variability that affects qualitative first-pass MR perfusion imaging. Second, ASL does not require
any contrast agents, resulting in reduced cost and reduced side effects. Third, ASL can be
performed continuously, which could open up new opportunities for repeated or even real-time
monitoring of patients (e.g. before, during, and after interventions). Finally, ASL has a potential
for the mapping of vascular territories in myocardium, allowing for evaluation of potential
vascular blockage and stenoses.
The overall aim of this work is to validate myocardial ASL in humans with our proposed
sequence, and demonstrate its potential to detect angiographically significant CAD.
3
1.1 Organization of This Dissertation
The remainder of this dissertation is organized as follows
Chapter 2: Background
This chapter contains an overview of MR physics, basic concepts of myocardial perfusion
imaging, and the generic mechanism of ASL perfusion imaging. The application of ASL to
myocardial perfusion imaging is described with its unique challenges.
Chapter 3: Graphical Analysis of Balanced Steady-state Free Precession
SSFP is an imaging method that provides very high signal-to-noise ratio (SNR) efficiency, and is
used in our work. This chapter presents a novel graphical approach to the solution of the steady-
state magnetization in balanced SSFP for intuitive understanding. The solution of magnetization
derived using Bloch equation is provided and compared with graphical derivation [105].
Chapter 4: Feasibility of Myocardial Arterial Spin Labeling in Humans
This chapter describes the development of myocardial ASL using FAIR tagging and SSFP
imaging, and our initial demonstration of feasibility in healthy volunteers. This study also
presents an analysis of thermal and physiological noise [108, 109].
4
Chapter 5: Measurement of Changes in Myocardial Perfusion with Vasodilatation
This chapter describes application of the proposed myocardial ASL method in suspected patients,
and demonstrates the clinically relevant increase in MBF measurements with vasodilatation. MBF
measurements in patients with and without CAD confirm a potential of myocardial ASL to
diagnose myocardial ischemia [112-114].
Chapter 6: Methods for Reducing Physiological Noise
We found that physiological noise is primarily responsible for the limited sensitivity of
myocardial ASL. This chapter describes three different approaches to reduce physiological noise
using background suppression, blood pool signal suppression, and shorter breath-holds [106, 107,
110, 111].
Chapter 7: Summary and Future Work
This chapter summarizes this dissertation and suggests several areas for future work.
5
Chapter 2
Background
2.1 MRI Physics
2.1.1 Nuclear Magnetic Resonance
In 1946, Felix Bloch theorized any spinning charged nucleus creates an electromagnetic field [8].
The magnetic component of this field causes atoms with an odd number of protons and/or of
neutrons to possess a nuclear spin angular momentum or simply spin. These spins can be
visualized as spinning charged spheres, and act like tiny bar magnets.
In the absence of an external magnetic field, the spins are randomly oriented and the net
magnetic field of spin ensemble is zero. With an external magnetic field B
0
, however, these spins
have two properties. First, the direction of magnetic field in each spin is all aligned with the
direction of B
0
, yielding a nonzero net magnetic moment. Roughly half of spins are parallel to the
direction of B
0
and, the other half are anti-parallel to the direction of B
0
. There are slightly more
6
spins that are parallel, and this difference (7 in 2x10
6
for hydrogen at 1.5 T) is utilized in MR
imaging. Second, these spins are all rotating around the direction of B
0
at a resonance frequency
called the Larmor frequency
(2.1)
where γ is the gyromagnetic ratio, a known constant for each type of atom.
Figure 2.1. Polarization of magnetic spins. Left: Spins are randomly oriented under normal
condition. Right: With the external magnetic field B
0
, two effects occur; (1) spins are aligned
with the direction of B
0
, (2) spins exhibit resonance around B
0
at a known resonance frequency.
0
2
B f
π
γ
=
B0
7
The net magnetic moment of the spin ensemble per unit volume is referred to as
magnetization, denoted as M. Macroscopically, the magnetization is also aligned with the
direction of B
0
and rotates around B
0
at the Larmor frequency (see Figure 2.2). The direction of
rotation can be found using left hand rule: when left hand’s thumb points in the magnetic field
direction, the fingers point in the precession direction.
In practice, resonance frequency is not spatially uniform. The sources of resonance
offset include intrinsic inhomogeneity of the B
0
magnetic field, susceptibility difference between
tissues, and chemical shift. The total off-resonance is determined by superposition of all these
contributions, and plays important factor in MRI imaging.
Figure 2.2. Illustration of magnetization. Magnetization is aligned with B
0
at equilibrium and
rotates around B
0
based on left hand rule. When thumb points in the magnetic field direction, the
fingers point in the precession direction.
=
M
B0
B
M
8
Figure 2.3. Magnetization excitation viewed in the rotating frame. The direction of rotation
caused by B
1
can be found using the same left hand rule as used with B
0
.
2.1.2 Excitation
In the presence of a static magnetic field B
0
, the magnetization can be manipulated by an extra
magnetic field B
1
. This magnetic field is applied using a radiofrequency (RF) pulse tuned to the
resonance frequency in the plane perpendicular to B
0
. To simplify the further explanation,
consider a frame that rotates at the same frequency of B
1
which is typically the same as Larmor
“In rotating frame”
x
yy
x
M
B
M
M
B1
z z
9
frequency [6]. All the notation will be based on rotating frame form here on. In this rotating
frame, the magnetic field B
1
appears to have a constant vector direction, and B
0
does not exist.
The magnetization is rotated around the direction of B
1
based on the same left hand rule and Eq.
2.1 (see Figure 2.3). This rotation of magnetization caused by B
1
is referred to as excitation. By
manipulating B
1
(t), a particular angle of excitation can be achieved. Typically, a small tip ( ≤50°)
excitation is used in imaging acquisition, but flip-angle as large as 180° can be required in certain
sequences. Figure 2.4 illustrates examples of 90° excitation and 180° excitation (or inversion).
Figure 2.4. Illustration of 90° excitation and 180° excitation (or inversion). B
1
determines the
flip-angle of excitation.
x
x
y
90° excitation 180° excitation
(Inversion)
B1
z
y
z
B1
10
There exists imperfection in the applied B
1
magnetic field. This B
1
inhomogeneity is
problematic in image acquisition because the offset changes excitation flip-angle, leading to
spatial variation of signal intensity and contrast change in the images. In certain sequences, it is
critical to achieve uniform excitation with exact flip-angle such as 90° or 180° regardless of B
1
variation. Adiabatic pulses are the class of RF pulses that were invented to meet this requirement
[28, 34, 69, 79, 87]. In adiabatic excitation, B
1
field has a time-dependent amplitude A(t) and a
time-dependent carrier frequency ω
rf
(t):
(2.2)
In a rotating frame whose angular frequency equals ω
rf
(t), the effective magnetic field B
eff
can be
decomposed into two orthogonal components. The transverse component of B
eff
is the envelope
of the pulse,
(2.3)
where the B
1
field is initially applied along y-axis. The longitudinal component of B
eff
is
(2.4)
t t i
rf
e t A t B
) (
1
) ( ) (
ω −
=
) ( ) ( t A t B
Y
=
γ
ω ω ) (
) (
t
t B
rf
Z
−
=
11
where ω is the resonance frequency ( ω= γB
0
). The effective magnetic field B
eff
is the vector sum
of these two components. By applying sine waveform in A(t) and cosine waveform in ω - ω
rf
(t),
one can achieve B
eff
that sweeps from +z axis to –z-axis on yz-plane as shown in Figure 2.5. With
this RF pulse, magnetization is effectively locked to B
eff
by rapid rotation around it and follows
the passage of B
eff
, provided that the direction of B
eff
does not change fast compared to the
angular frequency of magnetization rotation along B
eff
[74]. This condition known as the adiabatic
condition is described by
(2.5)
where ψ = arctan(B
Y
(t)/B
Z
(t)). Figure 2.5 illustrates 180° excitation using adiabatic pulse.
Adiabatic excitation with 90° can be achieved by modifying and composing multiple of these
segments [28, 89, 91].
Figure 2.5. Illustration of adiabatic excitation for 180° flip-angle (inversion). Magnetization is
effectively locked to B
eff
by rapid rotation around it, and follows the passage of B
eff
.
z
B
eff
x
y
x
y
z
x
y
z
M
M
M
B
eff
B
eff
eff
B
dt
d
γ
ψ
<<
12
2.1.3 Relaxation
Following excitation, magnetization returns to its thermal equilibrium position. This mechanism
is called relaxation and is characterized by two or more time constants for each tissue. Relaxation
can be described in two components; longitudinal component that is parallel to B
0
field and
transverse component that is perpendicular to B
0
field.
The longitudinal component of the magnetization M
Z
and the transverse component of
the magnetization M
XY
behave according to Eq. 2.6 and Eq. 2.7, respectively.
(2.6)
(2.7)
where M
0
is the magnitude of magnetization at its equilibrium state, and T
1
and T
2
are the time
constants that specify the relaxation of longitudinal and transverse components of the
magnetization, respectively. Figure 2.6 shows the example relaxation behavior of blood and
myocardium at 3T (T
1
/T
2
= 1512 ms/141 ms for blood and T
1
/T
2
= 1115 ms/41 ms for
myocardium [7]) after 90° excitation. The overall behavior of magnetization that is regulated by
magnetic field and relaxation can be described by the following Bloch equation.
1 1
/ /
0
) 0 ( ) 1 ( ) (
T t
Z
T t
Z
e M e M t M
− −
+ − =
2
/
) 0 ( ) (
T t
XY XY
e M t M
−
=
13
(2.8)
where i
ˆ
, j
ˆ
, and k
ˆ
are the unit vectors in x, y, and z, respectively.
0 500 1000 1500 2000 2500 3000
M0
0
Blood MZ
Blood MXY
Myocardium MZ
Myocardium MXY
Time (ms)
Figure 2.6. Relaxation behavior of longitudinal and transverse components of magnetization in
blood and myocardium after 90° excitation. T
1
/T
2
of the blood and myocardium are known to be
1512 ms/141 ms and 1115 ms/41 ms at 3T, respectively [7].
1
0
2
ˆ
) (
ˆ ˆ
T
k M M
T
j M i M
dt
d
Z Y X
−
−
+
− × = B M
M
γ
14
2.2 Myocardial Perfusion
2.2.1 Coronary Artery Disease
Coronary arteries are the small vessels that deliver oxygen-rich blood from the heart to its own
muscle (myocardium). Coronary artery disease (CAD) is the end result of narrowing of the
coronary arteries caused by accumulation of plaques within the vessel walls (see Figure 2.7).
Narrowing or occlusion of the coronary arteries can reduce blood flow to the myocardium,
possibly leading to chest pain, heart attack, arrhythmias, and heart failure. CAD is the single
leading cause of death in the United States, accounting for approximately 500,000 deaths per year,
and decreased quality of life for 13 million Americans [38]. Treatment is oriented towards the
preservation of ventricular function and the prevention of progression. Three categories of
diagnostic tests have been developed to assess the status of the heart: anatomical and functional
tests that measure the efficiency of the pumping action of the myocardium; angiographic methods
to evaluate the status of the coronary arteries; and approaches to assess myocardial perfusion and
viability. These three types of data play important and complementary roles in the management of
the cardiac patient.
• Assessment of ventricular function using measurements such as ejection fraction,
ventricular volumes, regional wall motion, and valvular function provide a means to
15
determine the level of ventricular decompensation or failure, which guides the type and
aggressiveness of treatment. Such measurements are provided most conveniently by
echocardiography or more accurately by MRI.
• Imaging of the coronary arteries is a direct measure of the severity of CAD, for which the
gold standard is X-ray angiography with cardiac catheterization, although less invasive
methods are being developed.
• Imaging of myocardial perfusion indicates the presence and distribution of myocardial
ischemia, and coupled with exercise, pharmacological stress, or vasodilation, can
demonstrate regional perfusion reserve. Regional myocardial perfusion has long been
evaluated using radionuclide imaging techniques such as SPECT and PET, and first-pass
techniques based on MRI.
Figure 2.7. Illustration of narrowing of the coronary vessels due to accumulation of plaques
within the vessel walls.
16
2.2.2 Myocardial Perfusion Imaging
Myocardial perfusion refers here to the general phenomenon of blood delivery to the myocardium.
Myocardial blood flow (MBF) refers to the quantitative rate of delivery of blood to the
myocardium (typically in ml-blood/g-tissue/min). MBF, along with exchange parameters,
determine the rate of delivery of oxygen and nutrients to the myocardium, as well as the rate of
clearance of waste products, and is thus a primary determinant of tissue viability.
Existing methods for myocardial perfusion imaging are useful but suboptimal. SPECT
and PET scanning can provide measures of MBF but suffer from low spatial resolution (see
Figure 2.8), and for this reason cannot reliably detect non-transmural perfusion deficits [71, 84].
The most widely used clinical SPECT protocols provide approximately 7-8 mm isotropic
resolution. In addition, exposure to ionizing radiation poses a risk to the patient, and limits the use
of these approaches for repeated or real-time scanning.
MRI-based first-pass methods are becoming widely used [46, 63, 84, 96] and provide a
means to qualitatively assess myocardial perfusion with higher spatial resolution than SPECT. In
these methods, a bolus of intravenous contrast agent is administered, and the first passage of the
bolus through the heart is monitored by rapid dynamic imaging. From these dynamic data, MBF
is calculated using the well-known deconvolution method [46]. First-pass methods, while
promising, have key limitations that include unresolved artifacts (e.g. dark rim) [23], difficulties
17
Figure 2.8. Examples of myocardial perfusion imaging with (A) SPECT and (B) PET [41].
with inter-observer variability [58] and absolute quantitation of MBF, and the toxic syndrome
known as nephrogenic fibrosing dermopathy in patients with end-stage renal disease [86].
2.3 Arterial Spin Labeled MRI
2.3.1 Basic Concepts
Arterial spin labeling (ASL) is a powerful tool for the quantitative measurement of tissue blood
flow using MRI, and has been primarily applied to the brain. The general idea of the technique is
illustrated in Figure 2.9. In this technique, radiofrequency pulses are used to modify the
longitudinal magnetization of arterial blood, generating an endogenous tag or tracer that decays
18
away with a time constant given by the T
1
relaxation rate ( ≈1.5 s for blood at 3 T [66]). After a
delay to allow tagged blood to flow into the target tissue, an image (tagged) is acquired that
reflects the inflow of tagged blood as well as static tissue in the slice. A second image (control) is
then acquired in the absence of a preceding tag pulse. Figure 2.10 compares magnetizations in
control and tagged images as a function of time. The inverted magnetization in tagged imaging
returns toward the equilibrium state as explained in Section 2.1.3, and image acquisition is
performed before the relaxation is completed. The magnetization difference between control and
tagged images should appear in the difference image (control - tagged). This difference reflects
the amount of tagged blood that has been delivered to the imaging region, and can be made
directly proportional to local tissue blood flow.
ASL has several key advantages compared to other perfusion imaging techniques. First,
the ASL signal is inherently and quantitatively related to tissue blood flow. Because the decay of
the tag is rapid, images are acquired within a few seconds of the application of the tag. As a
consequence, there is insufficient time for the tag to leave the target tissue by venous outflow.
Exchange of tagged blood water with tissue water further decreases the likelihood of washout.
This combination of factors results in a tracer technique in which the tag is effectively trapped in
the target tissue, similar to the classic microsphere-based blood flow measurement. Secondly,
ASL MRI is completely non-invasive, and does not require intravenous infusion of paramagnetic
contrast agents or exposure to ionizing radiation. It therefore poses no risk to the patient (above
that of a conventional MRI scan) and results in reduced cost and reduced side effects. For
19
example, ASL MRI could be safely applied in patients with end-stage renal disease who are not
candidates for first-pass MPI.
Figure 2.9. Generic diagram for ASL. ASL image is the difference of tagged (image with
tagging) and control (image without tagging) images (figure courtesy of Eric Wong).
Tag arterial blood
Image myocardium
Control
Difference
Image myocardium
+ tagged blood
Tagged
Wait for delivery
of tagged blood
(ASL images)
20
Figure 2.10. Illustration of arterial blood magnetization in control and tagged images as a
function of time.
2.3.2 Pre-clinical Applications
ASL have been mostly used to measure regional cerebral blood flow [20] owing to less motion in
brain. However, due to the recent discovery about nephrogenic systemic fibrosis (NSF) [86], the
application of ASL in other body parts gained attention as an attractive alternative to perfusion
imaging with contrast agent. A limited number of body ASL imaging have been successfully
demonstrated in relatively static tissues such as skeletal muscle [102], lung [10, 75], and kidneys
[25, 77]. Figure 2.11 shows example images of ASL from different body parts including brain.
M
0
Time
Control
Tagged
Imaging time
-M
0
21
Figure 2.11. Example ASL images from brain (A), lung (B), lower legs (C) (courtesy of Eric
Wong), and kidney (D) [25].
2.4 Myocardial ASL
2.4.1 Unique Challenges for ASL in the Heart
Compared to brain ASL, myocardial ASL faces several unique challenges. Cardiac motion
requires the gating of tagging and imaging to appropriate portions of the cardiac cycle, and rapid
imaging during the stable cardiac phases (mid-diastole or end-systole). It also limits the tag delay
to an integer number of R-R intervals for most ASL tagging schemes. Respiratory motion
requires the acquisition of tagged and control image pairs during the same breath-hold, during
synchronized breathing, with navigator echo, and/or with careful image registration. The cardiac
geometry complicates the location and timing of tagging, and leads to a high apparent ASL signal
in the left ventricular (LV) blood pool with conventional tagging schemes. Finally, the intrinsic
22
myocardial signal-to-noise ratio (SNR) achieved with modern cardiac phased-array coils is
roughly three times lower than the intrinsic gray matter SNR achieved with modern head coils,
leading to a significant increase in the number of averages required for reliable tissue blood flow
quantification.
2.4.2 Cardiac Physiology
For the purposes of the ASL measurement, the relevant features of the myocardial vascular
physiology are 1) the transit delay to the microcirculation, 2) the exchange of water between
blood and tissue water pools, and 3) the transit time through the capillary bed.
Transit delays, while they may be estimated from coronary angiography, will depend
strongly on tagging geometry and timing, and can affect MBF quantitation [12]. In the brain, the
transit delay allows for calculations and corrections for CBF. However, because the inflow of
blood in the myocardium is pulsatile, the quantification of MBF, which is dependent upon the
fraction of the tagged blood delivered in one cardiac cycle, is non-linearly related to the transit
delay itself.
Water exchange affects the transition of the relaxation rate of the tag from the T
1
of
blood to that of myocardium. Because the T
1
of myocardial tissue is shorter than that of blood,
this is likely to have an effect on MBF quantitation. In most of ASL applications, it is assumed
23
that there is a complete water extraction from the vascular space to tissue immediately after
arrival in the tissue, and the relaxation rate of tagged magnetization becomes that of tissue.
Capillary transit time influences the outflow of tagged blood into the venous circulation
prior to image acquisition. The single pass extraction of water in the myocardial capillary bed is
thought to be high ( ≈95%) [5], and the capillary transit time is ≈0.9 sec [1]. This combination of
parameters gives a mean transit time from arteriole to venule of tens of seconds (depending on the
myocardial blood volume) and thus outflow of tagged blood is not likely to be an issue for
myocardial ASL.
With these three considerations, the general kinetic model [12] that is widely used to
describe cerebral blood flow in brain ASL studies, is entirely applicable to the description of
MBF in myocardial ASL studies, and differs only in the values of the parameters.
2.4.3 Myocardial ASL in Animals
Previous attempts at myocardial ASL have been successful in small animals such as rats [52, 93,
97]. The advantages in small animals include: (1) SNR is high due to local radio frequency (RF)
coils, (2) the intrinsic MBF values are at least 4 times higher than those of humans, leading to
high SNR, and (3) heart rates are high, enabling apparent T
1
mapping [4] to be comfortably
24
performed (i.e., the T
1
recovery curve can be sampled at many time points, each during a stable
cardiac phase).
2.4.4 Previous Studies on Myocardial ASL in Humans
Compared to myocardial ASL in small animals, the development of human myocardial ASL is
still at an early stage [2, 9, 67, 73, 95, 98, 104, 108]. Preliminary studies have been mostly based
on flow-sensitive alternating inversion recovery (FAIR) [49, 53], and differ in the models used
for quantification and the methods used for breathing control and image acquisition. Wacker et al.
[95] utilized apparent T
1
measurement after a saturation pulse (instead of an inversion pulse),
which avoids the need for full relaxation between measurements, leading to reduced scan time
and improved performance in the presence of irregular heart rates. Zhang and Northrup et al.
acquired sets of images following a single inversion pulse for apparent T
1
measurement,
accounting for magnetization saturation effects due to imaging excitation, and demonstrated this
approach in dogs [104] and humans [67]. Poncelet et al. [73] utilized a quantification model
derived from the Bloch equation, along with synchronized breathing, double-gating, and echo-
planar imaging (EPI) image acquisition. A data fitting procedure was used to extrapolate the ASL
signal from data acquired with different inversion times (caused by variations in heart rate). An et
al. [2] employed a similar quantification model using FAIR tagging and balanced SSFP image
25
acquisition, and performed image acquisition in a pseudo-steady state, assuming constant heart
rate. More recently, Blume et al. [9] used apparent T
1
mapping-based method with 4-fold
acceleration technique. Despite these attempts, none have reported sufficient image quality and
measurement consistency to provide useful diagnostic information in individual patients.
2.4.5 Myocardial ASL at 3 Tesla
Compared to 1.5 T, myocardial ASL performed at 3 T has several advantages. First, the
equilibrium spin polarization is doubled, leading to direct two-fold increase in intrinsic SNR.
Second, the T
1
relaxation time of blood is longer by roughly 30%. Longer T
1
delays the decay of
the tag and preserves a larger ASL signal, for the same inversion time. Both of these effects
dramatically increase the ASL signal, which is intrinsically quite low. Furthermore, 3 T is
currently the highest field strength approved for clinical scanning by the FDA, making it easier to
evaluate the methodology in patients.
In contrast, myocardial ASL at 3 T also has disadvantages such as RF heating, off-
resonance, and B
1
inhomogeneity, all of which are general difficulties in cardiac imaging at 3 T.
SAR (specific absorption rate) is the indicator of unwanted heating due to RF energy deposition,
and is a constraint in most of imaging at 3 T. A careful selection of RF pulse is required to reduce
RF power deposition. While SAR is the issue related to patient safety in MRI, off-resonance and
26
B
1
variation are imaging constraints that cause image artifacts or loss of SNR efficiency. Off-
resonance is doubled at 3 T, and this limits many imaging sequences. For example, repetition
time (TR) ≤ 3.8ms is required to avoid banding artifacts in SSFP imaging sequence [80]. B
1
variation ranges up to 63% in the entire LV volume at 3 T [90]. In most of ASL experiments,
tagging is realized by adiabatic inversion to achieve the maximum and uniform tagging efficiency
regardless of B
1
variation. In-vivo optimization of parameters in adiabatic pulse is required in
myocardial ASL.
27
Chapter 3
Graphical Analysis of Balanced Steady-state Free Precession
Balanced SSFP imaging (also known as True-FISP, FIESTA, or Balanced FFE) has emerged as a
powerful and important imaging technique which provides exceptionally high signal-to-noise
ratio (SNR) efficiency and useful T
2
/T
1
-based contrast. This technique, originally proposed by
Carr in 1958 [13] became practical only recently [19], due to the development of high-speed
gradients that permit scanning with short repetition times. Balanced SSFP has found important
applications in cardiovascular[64, 80], musculoskeletal [37], and neurologic imaging [62].
Furthermore, balanced-SSFP is a desirable imaging method in ASL techniques [2, 9, 48, 61, 108]
because ASL-based perfusion imaging suffers from low intrinsic SNR. A matrix treatment of the
balanced SSFP sequence can be used to find an exact solution for the steady-state signal [45],
analyze transient response [36], and find the maximum signal amplitude on-resonance with its
corresponding flip angle [82].
Compared to these matrix-based analyses, there has been little exploration into
geometry-based analyses which often provide a more intuitive understanding. With similar
28
motivation, Dharmakumar et al. suggested a geometrical description of SSFP by identifying the
steady-state locus of magnetization at the time immediately after each excitation pulse for a given
set of imaging parameters [22]. In this chapter, we introduce a new graphical derivation of the
steady-state signal in SSFP from a different perspective and provide a simple visualization of how
the steady-state signal is affected by variation of the parameters, and matches known signal
profiles (see Fig. 3.1). We introduce a new parameter “effective flip angle”, which is a unique
determiner of signal strength in the steady state along with T
2
/T
1
, and which effectively combines
the effects of imaging flip angle and off-resonance precession. This offers a concise and intuitive
picture of the balanced SSFP signal profile and how it can be manipulated. Unfortunately, we
discovered later that this work overlapped in many parts with the paper from Schmitt [83] that
was published a few months prior to us.
−150 −100 −50 0 50 100 150
0
0.05
0.1
0.15
0.2
0.25
α = 10°
α=60°
α = 30°
α = 90°
α = 12 0°
θ
|Mxy|
Figure 3.1. Alternating balanced SSFP profiles according to different flip angles for
T
1
/T
2
=1000ms/300ms. θ denotes off-resonance precession within TR.
29
3.1 Matrix Analysis
SSFP imaging consists of a rapidly repeating sequence of excitations and acquisitions.
Excitations have alternating sign, in order to ensure high signal on-resonance. In SSFP, all
imaging gradients are rewound over the course of one repetition. The SSFP signal is highly
sensitive to resonance frequency as shown in Figure 3.1, but provides superior SNR efficiency
compared to gradient echo techniques.
There have been many works that derive the balanced SSFP signal using matrix analysis
[11, 22, 26, 42, 115]. We will summarize this approach to find the solution that incorporates off-
resonance. For the tip angle α and off-resonance precession angle θ within TR, let
A
TR
⎥
⎥
⎥
⎦
⎤
⎢
⎢
⎢
⎣
⎡
=
1
2
2
0 0
0 0
0 0
E
E
E
(3.1)
b
TR
⎥
⎥
⎥
⎦
⎤
⎢
⎢
⎢
⎣
⎡
− ⋅
=
) 1 (
0
0
1 0
E M
(3.2)
R
Y
( α)
⎥
⎥
⎥
⎦
⎤
⎢
⎢
⎢
⎣
⎡ −
=
α α
α α
cos 0 sin
0 1 0
sin 0 cos
(3.3)
R
Z
( θ)
⎥
⎥
⎥
⎦
⎤
⎢
⎢
⎢
⎣
⎡
− =
1 0 0
0 cos sin
0 sin cos
θ θ
θ θ
(3.4)
30
where E
1
=exp(-TR/T
1
), E
2
=exp(-TR/T
2
) and M
0
is the proton density. A
TR
⋅M+b
TR
is a relaxed
magnetization of M after time TR, R
Y
( α) is a left-handed rotation matrix about y-axis by flip
angle α, and R
Z
( θ) is a left-handed rotation matrix about z-axis by free precession angle θ. Then,
the magnetizations at different timing in Figure 3.2 can be expressed as
M
2
=A
TR
⋅R
Z
( θ) ⋅M
1
+b
TR
M
3
=R
Y
(- α) ⋅M
2
M
4
= A
TR
⋅R
Z
( θ) ⋅M
3
+b
TR
M
5
=R
Y
( α) ⋅M
4
(3.5)
In the steady state, M
1
=M
5
=M
SS
and Eq. 3.5 becomes M
SS
=A
TR
⋅M
SS
+b
TR
. Therefore, M
SS
=(I-
A
TR
)
-1
⋅b
TR
where I is a 3 ×3 identity matrix. The transverse component M
XY
at echo time can be
analytically expressed as
.
1 cos cos cos cos cos cos cos cos
) cos 2 1 ( ) 1 ( sin
) (
) (
2 2 1
2
2 1 2 1
2
2 2 1
2
2 2 2 1 0
2
+ + − − + − + −
+ + − ⋅
=
⋅ = =
=
θ θ θ α α α θ α
θ α
E E E E E E E E E E
E E E E M
E t t M
t t M
SS XY
TE XY
(3.6)
31
Since T
1
,T
2
>>TR, the approximations E
1
=exp(-TR/T
1
) ≈1-TR/T
1
and E
2
=exp(-TR/T
2
) ≈1-TR/T
2
can be used to simplify Eq. 3.6 to
2
cos ) cos 1 (
2
cos
1
) cos 1 (
sin
) (
2
1
0
θ
α
θ
α
α
⋅ + + ⋅ ⋅ −
⋅
= =
T
T
M
t t M
TE XY
(3.7)
This is the signal strength solution from matrix derivation. M
XY
is a function of α, θ, T
1
, T
2
, and
M
0
. This will be compared with the result from our new derivation based on graphical analysis. A
version of this equation for the on-resonance case ( θ=0) can be found in Ref. [22, 42, 82, 115].
M1 M3 M2 M4
α − α α
TR TR
M5
Figure 3.2. RF sequence of alternating balanced SSFP. M
X
’s denote the vector magnetization
right before or after the excitation. In the steady state, M
5
=M
1
.
32
3.2 Graphical Analysis
3.2.1 On-resonance
In the case of alternating balanced SSFP exactly on-resonance ( Δf=0), the magnetizations in the
steady state are shown in Figure 3.3 (relaxation is exaggerated in this figure). The four
magnetizations in Figure 3.3 all must have exactly the same magnitude; that is,
⎪M(0) ⎪= ⎪M(TR) ⎪. The variation of magnetization due to relaxation over one repetition can be
expressed as
) 1 ( ) 0 ( ) 0 ( ) (
2
− ⋅ = − = Δ E M M TR M M
XY XY XY XY
(3.8)
) 1 ( )) 0 ( ( ) 0 ( ) (
1 0
E M M M TR M M
Z Z Z Z
− ⋅ − = − = Δ . (3.9)
Let M
XY
(0) ≈ M
XY
(TR) ≈ M
XY
(TE) = M
XY
and M
Z
(0) ≈ M
Z
(TR) ≈ M
Z
(TE) = M
Z
since the
disposition caused by relaxation is negligible. Again, if T
1
,T
2
>>TR, the approximations E
1
=exp(-
TR/T
1
) ≈1-TR/T
1
and E
2
=exp(-TR/T
2
) ≈1-TR/T
2
can be used, and Eq. 3.8 and 3.9 become
) / (
2
T TR M M
XY XY
⋅ − = Δ (3.10)
) / ( ) (
1 0
T TR M M M
Z Z
⋅ − = Δ (3.11)
33
M(TR) M(TR)
M(0) M(0)
2
2
z
x
Figure 3.3. Steady-state magnetizations of alternating balanced SSFP on resonance with
exaggerated relaxation. Symmetry about z-axis requires that the four magnetization vectors have
the same magnitude, which means that ( ΔM
XY
, ΔM
Z
) from relaxation must be perpendicular to
the magnetization position vector (M
XY
, M
Z
).
The key observation is that the relaxation direction vector ( ΔM
XY
, ΔM
Z
) must be perpendicular to
the magnetization position vector (M
XY
, M
Z
) in order to preserve magnitude. This would not
necessarily be true if the four magnetizations have a different magnitude in the figure. The
perpendicularity yields the following equation,
XY
Z
Z
XY
M
M
M
M
Δ −
Δ
= =
2
tan
α
1
2 0
T
T
M
M M
XY
Z
⋅
−
≈
1
2
0
2 / tan
T
T
M
M
M
XY
XY
⋅
−
=
α
. (3.12)
34
Therefore,
) cos 1 ( ) cos 1 (
sin
2
1
0
α α
α
+ + ⋅ −
⋅
=
T
T
M
M
XY
. (3.13)
This matches Eq. 3.7 with θ=0. M
XY
is independent of TR but a function of (T
1
/T
2
), α, and M
0
.
The relationship between M
XY
and M
Z
without α can also be derived from Eq. 3.12.
2
0
2
0
2
1
2
2 2
⎟
⎠
⎞
⎜
⎝
⎛
= ⎟
⎠
⎞
⎜
⎝
⎛
− + ⋅
M M
M
T
T
M
Z XY
(3.14)
which is an elliptic equation. The trajectory of (M
XY
, M
Z
) in the steady state is shown as a function
of α in Figure 3.4. This ellipse pattern was shown by Hennig et al. [40] in a description of the
transition to steady state, and now has an intuitive explanation. The transition can be thought of as
a process of moving along α/2 line to find the equilibrium point where the relaxation vector and
α/2 line are perpendicular to each other. From Figure 3.4, one can see that the greatest possible
transverse signal amplitude
1 2 0
/ 2 / T T M ⋅ is achieved when (M
XY
, M
Z
) reaches the rightmost
point, at which
35
1
2
2
tan
T
T
=
α
or
2 1
2 1
cos
T T
T T
+
−
= α . (3.15)
This explains that the alternating SSFP signal strength on resonance increases and then decreases
after some point as the imaging flip angle is increased. Equation 3.15 is equal to Eq. 3.3 in Ref.
[82]. The maximum transverse signal for balanced SSFP confirms T
2
/T
1
contrast.
α
2
1
2 0
2T
T M
2
0
M
0
M
x
z
Figure 3.4. Magnetization (M
XY
, M
Z
) in the steady state as a function of α. When magnetization
reaches the rightmost point of the ellipse, the greatest transverse signal is produced.
36
3.2.2 Off-resonance
Now, we introduce off-resonance to the graphical analysis of alternating balanced SSFP, and let
the dephasing angle within TR be θ. Figure 3.5a shows the path that SSFP magnetization follows
in the steady state. All the magnetizations are refocused at TE=TR/2 regardless of off-resonance
[81]. To consider the magnetization at the echo as shown in Figure 3.5, the two magnetizations
are forming angle α′ which is equivalent to the sum of two angles between the z-axis and each
magnetization before and after the RF tip in Figure 3.5a under the assumption that the effect of
relaxation is negligible during TE. The balanced SSFP with off-resonance can now be modeled as
a balanced SSFP on-resonance but with effective flip angle α′. It can be geometrically shown that
2
cos
2
tan
2
'
tan
θ
α
α
= . (3.16)
37
2
2
z
y
a b
z
x
y
x
Figure 3.5. Balanced SSFP with off-resonance precession in the steady state. Solid and dotted
arrows denote precession and instant excitation respectively. a: Magnetizations immediately
before and after RF pulse. b: Magnetizations at TE=TR/2. The effective flip angle α′ is
equivalent to the sum of two angles that each magnetization in a forms with z-axis.
Therefore, the balanced SSFP magnetization at TR/2 with off-resonance will still lie along the
same curve shown in Figure 3.3, but with effective flip angle α′ as opposed to α. Substituting α′
for α in Eq. 3.13 and plugging in Eq. 3.16, Eq. 3.13 becomes
2
cos ) cos 1 (
2
cos
1
) cos 1 (
sin
2
1
0
θ
α
θ
α
α
⋅ + + ⋅ ⋅ −
⋅
=
T
T
M
M
XY
(3.17)
38
| |
| |
| |
Figure 3.6. Effective flip angle, magnetization at echo time, and steady-state signal as a function
of prescribed flip angle and off-resonance θ. For α=10 ° (top row), α=40 ° (middle row), and
α=140 ° (bottom row), the figures show how the effective flip angle, M(TE), and transverse
component profile are related as off-resonance changes. T
1
=1000ms, T
2
=300ms, and TE=TR/2.
which is identical to the matrix derivation of Eq. 3.7. This α′ can also be substituted for α in Eq.
3.15 to find the flip angle α that produces the maximum signal for the corresponding off-
resonance. Equation 3.16 shows that the effective flip angle α′ is a function of α and off-
39
resonance angle θ. On resonance, α′ is the same as α, and as θ increases from 0 ° to 180 °, α′ also
increases and reaches 180 °. Figure 3.6 illustrates how the magnetization has different frequency
profiles according to flip angle α. Since α′ remains around its initial value α on-resonance and
then increases towards 180 ° as θ increases, the corresponding magnetization along the M
XY
-M
Z
trajectory moves down slowly in the upper portion of semi-ellipse, and gets faster when going
through the lower portion.
3.3 Discussion
While gradient echo (GE) sequences have precession due to off-resonance and gradient pulses,
balanced SSFP only retains precession due to off-resonance because the total gradient area
amounts to zero over each repetition interval. Therefore, what is left in balanced SSFP is off-
resonance precession, RF excitation, and relaxation. Since relaxation is often neglected in most of
MR excitation analysis, it is very tempting to believe that the banding profile of balanced SSFP is
the result of balancing precession and excitation. However, in the steady state, T
1
and T
2
relaxation plays the critical role in determining the signal profile, in which the relaxation
direction vector should be perpendicular to the magnetization vector. This produces the
phenomenon of magnetization in the steady state always falling on an ellipse.
40
One exceptional case where the presented analysis as well as matrix derivation with
approximation does not apply is when α is extremely small (less than 1 °). According to Eq. 3.17
or Eq. 3.7, signal amplitude should be a zero at θ=180 ° regardless of flip angle α, and thus show
two peaks just adjacent to θ=180 ° for very small α (Figure 3.7a). But the exact simulation
without approximation demonstrates that only one small peak is observed at θ =180 ° instead of
two peaks as shown in Figure 3.7b. This can be explained by the fact that relaxation has a more
dominant impact on the magnetization in this case. Relaxation was ignored when off-resonance
SSFP was modeled as on-resonance SSFP in Figure 3.5 since it typically has negligible effect on
the angle between z-axis and magnetization during precession. This is not true for extremely
small α. Angle variation due to relaxation becomes significant because the initial angle is small,
and therefore the magnetization no longer follows the model described in Figure 3.4.
We considered alternating SSFP [42], however, an almost equivalent graphical analysis
can be applied to non-alternating balanced SSFP. Off-resonance angle φ for non-alternating SSFP
can be viewed as 180 °- θ, where θ is off-resonance angle for alternating SSFP. Therefore, the
signal profile of non-alternating SSFP is simply a 180 ° shifted version of that derived for
alternating SSFP.
In conclusion, the balanced SSFP signal profile has been derived in a novel graphical
manner. Geometry-based derivation not only gives a fresh intuition of SSFP but further
demonstrates the critical role of relaxation on the SSFP signal strength. This graphical analysis
could be used to analyze more complex SSFP such as ones that create oscillating steady states [65,
41
70, 94], and may be used to develop catalyzation sequences or to develop tailored excitations to
maximize uniformity of the SSFP signal. When using balanced SSFP in myocardial ASL, it is
important to minimize the signal fluctuation due to off-resonance (see Figure 3.1) because subtle
signal change can interfere with inherently low ASL signal.
0 50 100 150 200 250 300 350
0
0.05
0.1
0.15
0.2
0.25
a
b
0 50 100 150 200 250 300 350
0
0.05
0.1
0.15
0.2
0.25
θ
θ
|Mxy| |Mxy|
Figure 3.7. Signal profile based on graphical derivation or simulation with approximation (a) and
the simulation without approximation (b) for extremely small flip angle. According to the exact
simulation, one peak is observed at θ=180 ° instead of two peaks.
42
Chapter 4
Feasibility of Myocardial Arterial Spin Labeling in Humans
In this chapter we demonstrate the feasibility of MBF measurement in humans, using breath-held
cardiac-gated FAIR tagging and SSFP imaging at 3 Tesla, and present an analysis of thermal and
physiological noise and their impact on MBF measurement error. Resting MBF measurements in
ten healthy volunteers match ranges established using quantitative
13
N-Ammonia PET. The
myocardial ASL signal was found to be inflow dependent, and was found to increase with passive
leg elevation and isometric handgrip stress. We also determine that myocardial ASL is critically
limited by physiological noise, which is an important challenge for further investigation.
43
4.1 Methods
4.1.1 Pulse sequence
Myocardial ASL was performed using a cardiac-gated FAIR-SSFP [2, 61] pulse sequence
illustrated in Figure 4.1. FAIR tagging utilizes slab-selective and non-selective inversion pulses
applied alternately to generate control images (without inversion of out-of-slice blood) and tagged
images (with inversion of out-of-slice blood) respectively. Inversion and imaging are both
centered at the same cardiac phase (mid-diastole, as determined by CINE scout scan) in
successive R-R intervals such that the inversion slab contains the imaging slice, and the estimated
MBF provides the average perfusion rate of pulsatile blood flow over one R-R interval. One pair
of control and tagged images was acquired during a single breath-hold to minimize spatial mis-
registration during subtraction. There was a 6-second time delay between the two image
acquisitions, to allow for near-complete recovery of longitudinal magnetization. Six breath-holds
(approx. 10-12 sec each) were performed to enable signal averaging of the tagged and control
images. One short breath-hold (< 3 sec) was performed to acquire a baseline image (i.e. with no
preparation) for quantification. The time delay between breath-holds was kept ≥ 15 seconds to
ensure complete recovery of longitudinal magnetization. The subject’s heart rate was monitored,
and pulse timings were adjusted in real-time to follow the appropriate cardiac phase. To achieve
complete cancellation of static tissue signal during subtraction, the inversion delay was kept
44
SSFP
IMAG
1
-0.5
0
0. 5
1
Mz / M o
Blood (control)
Myocardium
Blood (tagged)
Control: selective INV
Tagged: non-sel INV
Fat Sat
Initial Prep
RR
Figure 4.1. Myocardial ASL pulse sequence. Tagging and imaging are both centered at mid-
diastole. Using Flow-induced Alternating Inversion Recovery (FAIR), preparatory inversion
pulses are either slab-selective or non-selective to generate control or tagged images, respectively.
Imaging is performed using a snapshot balanced steady-state free precession (SSFP) sequence
that is preceded by fat saturation, to reduce signal from epicardial fat, and a 5-tip linear ramp
preparation, to minimize transient signal oscillations. During each breath-hold, one control image
and one tagged image are acquired with a 6-second pause in between.
identical for each image pair obtained in the same breath-hold. If there was a change in heart-rate
during the breath-hold, the timing of the inversion pulse prior to the second image acquisition was
shifted slightly, and for all practical purposes, still occurred during diastasis. The order of control
and tagged image acquisition was alternated in each breath-hold and an even number of
repetitions was used, in order to eliminate any bias due to incomplete recovery.
45
Image acquisition was performed using a snapshot 2DFT balanced SSFP sequence with
3.2 ms TR (total duration of 313 ms), 50 ° prescribed flip angle, and linear view ordering with full
k-space acquisition. A 5-tip linear ramp was used to reduce signal oscillations during the transient
SSFP acquisition [55]. In each study, a single mid-short axis slice was imaged using a 96×96
matrix over a 20-24cm isotropic FOV, with 10mm slice thickness. Acquisitions were
prospectively gated using ECG or photo-plethysmograph signals. Inversions were achieved using
adiabatic (hyperbolic secant) pulses because of their insensitivity to B
0
and B
1
variation (See
Section 2.1.2). For slab-selective inversion, a thickness of 30 mm was used to trade off tolerance
to slice profile imperfections and reduction of transit delay.
4.1.2 Reconstruction
Images were reconstructed using SENSE [76] with the reduction factor, R = 1, also known as
Optimal B
1
Reconstruction (OBR) [32, 78]. Thus, SENSE reconstruction was used not for
acceleration but to optimally combine signal from all coils and produce real-valued images that
retain Gaussian image statistics even when the signal amplitude is close to zero. Note that in low
SNR cases, sum-of-squares reconstruction results in image signal that follows a noncentral chi
distribution. Coil sensitivity maps and the channel noise covariance matrix were obtained in a
standard way [76] prior to ASL imaging.
46
4.1.3 Quantification
Regions of septal myocardium were manually segmented for each breath-hold, based on the
difference signal (control – tagged). Regional MBF was estimated using following equation:
(4.1)
derived from Buxton’s general kinetic model [12], where C, T, and B refer to the mean
myocardial signal on the region of interest in the control, tagged, and baseline images, RR
represents the interval between two consecutive R waves, T
1
corresponds to T
1
of blood, and ρ is
the normal myocardium density (1.053 g/ml). Signal averaging was performed over voxels within
a region of interest as well as over multiple breath-holds to increase SNR.
4.1.4 Noise Analysis
Thermal Noise Analysis: Tagged and control images will each be corrupted by thermal noise,
which will propagate to the MBF measurement. For Cartesian acquisitions, thermal noise is i.i.d.
(independent and identically distributed) additive white Gaussian in the image domain. Consider
σ
N
, to be the noise standard deviation for each voxel in each source image (tagged and control). C
ρ ⋅ ⋅ ⋅
−
=
−
1
/
2
T RR
e RR B
T C
MBF
47
– T in Eq. (4.1) can be considered a random variable with a standard deviation
N
σ ⋅ 2 for each
voxel. When signals are averaged over N
avg
voxels (e.g. over a spatial region and/or multiple
breath-holds), the standard deviation of C – T becomes
N avg
N σ ⋅ / 2 . Therefore, the measured
MBF error ( ΔMBF) is expected to follow a Gaussian distribution, with zero mean and standard
deviation:
(4.2)
where variations in B can be neglected because of the high SNR of baseline images (> 40 in our
studies). For given SNR, RR interval, and T
1
of blood, Eq. (4.2) relates the number of averages,
N
avg
to the distribution of measured MBF error. We calculated the minimum number of voxels to
be averaged such that the measured MBF error is < 0.1 ml/g/min with > 90% confidence. With
SNR = 70, heart rate = 60 bpm, and T
1
of blood = 1660 ms, this minimum number is about 300.
In order to achieve close to this number of voxels over a septal ROI, we acquired six tagged and
control image pairs during six breath-holds, with about 50 voxels in the prescribed ROI for each
breath-hold for all scans. MBF measurement confidences were re-examined after the scan using
the actual ROI sizes and the measured SNR for each subject.
Physiological Noise Analysis: One of the critical sources of errors in myocardial ASL is the
physiological noise caused by metabolic fluctuation, respiratory and cardiac motion, and other
1
/
,
2
/ 2
T RR
N avg
T MBF
e RR B
N
−
⋅ ⋅
⋅
=
σ
σ
48
unknown variations over time. The variance of MBF measurements from each of the six breath-
holds was calculated to estimate the temporal variation of the measurements. For the offset
caused by alternating control/tagged imaging order to be excluded from the variance estimation,
the variance of six measurements, σ
S
2
was calculated as follows.
2
2 2
2 even odd
S
σ σ
σ
+
= (4.3)
where σ
2
odd
is a variance of average MBF from 1
st
, 3
rd
, and 5
th
breath-holds (tagged image
acquired before control image), and σ
2
even
is a variance of average MBF from 2
nd
, 4
th
, and 6
th
breath-holds (control image acquired before tagged image). Based on the Gaussian model of
physiological noise, the measured MBF error averaged from 6 breath-hold follows Gaussian
distribution with zero mean and standard deviation:
(4.4)
where N
BH
is the number of breath-holds, which was 6 for all scans. The probability of measured
MBF error being < 0.1 ml/g/min was re-calculated using this distribution.
BH
S
P MBF
N
σ
σ =
,
49
4.1.5 Experimental Methods
Experiments were performed on two 3 T whole-body short bore scanners (Signa Excite HD, GE
Healthcare, Waukesha, WI) with gradients supporting 40 mT/m amplitude and 150 mT/m/ms
slew rate. The body coil and an 8-channel cardiac array coil were used for RF transmission and
signal reception, respectively. Each subject was screened and provided informed consent in
accordance with institutional policy.
Resting MBF: Resting MBF measurements were performed in ten healthy volunteers (8 males/2
females, ages 28-35 years, heart rate 50-76 bpm). Five of the subjects were imaged twice on
separate days, resulting in fifteen total scan sessions. No restriction was placed on exercise or
caffeine/food intake prior to imaging.
Dependence on Inflow: In five healthy subjects, myocardial ASL scans were performed with
three different tagging regions. In these three scans, the thickness of the selective inversion used
for the control image was modified to include either: 1) only the imaging slice (3 cm thick), 2) the
entire LV myocardium up to the aortic valve plane (12 cm thick), or 3) everything (nonselective).
Increasing the thickness of the slab-selective inversion reduces the tagged blood volume, and is
expected to reduce the measured MBF. Case 2 excludes blood already in the coronary vasculature.
Case 3 excludes all blood, leading to an expected MBF measurement of zero.
50
Modulation with Mild Stress: In seven healthy subjects, myocardial ASL scans were performed
at rest, and with two forms of mild stress: leg elevation and handgrip. For leg elevation, both
the subjects’ legs were passively elevated by 30-40 degrees to increase venous return. Leg
elevation started 5 minutes before scanning and was maintained throughout the ASL scan. For
handgrip stress, the subjects were asked to maintain isometric handgrip at 40% of maximum
voluntary contraction (MVC) [39, 51]. Handgrip was initiated 1 - 2 minutes before each ASL
scan, was maintained throughout the ASL scan, and was monitored by a handgrip dynamometer.
MBF during handgrip is expected to be roughly 35% higher than at rest [56]. Aortic blood flow
(ABF) during leg elevation is expected to be roughly 16% higher than at rest, which likely results
in increased MBF as well [54]. For this study only, subjects were asked to refrain from caffeine
or food intake for 4 hours prior to the scan, because these can increase resting MBF, and reduce
the amount of MBF modulation caused by these stressors.
4.2 Results
4.2.1 Resting MBF
The measured resting MBF, standard deviation of MBF error, and confidences for MBF error <
0.1 ml/g/min based on thermal noise only and physiological noise, are summarized in Table 4.1.
51
The measured MBF range was 0.70 - 2.14 ml/g/min, which is consistent with the quantitative
13
N-Ammonia PET literature that has reported 0.73 - 2.43 ml/g/min as a range for asymptomatic
human subjects [15]. The confidence based on thermal noise only was in a range of 70 - 99 %.
This variation can be largely explained by the variation in intrinsic SNR and the variation in
septal ROI size across subjects. The septal ROI size ranged from 1.35 to 6.53 cm
3
, where smaller
septal ROIs were used in subjects with thinner myocardium. The confidence based on
physiological noise was 18-94 % showing a substantially wider range compared to that of thermal
noise. The standard deviation of MBF error due to thermal noise only and physiological noise
were 0.065±0.018 ml/g/min and 0.218±0.115 ml/g/min respectively. The physiological noise is
about 3.4 times higher than thermal noise although this value is affected by the size of ROI for
each breath-hold. Note that the effect of thermal noise decreases systematically with larger ROI
size, however this is not the case for physiological noise, as it is expected to have spatial
correlation.
Figure 4.2 contains an illustration of the septal ROI, and a plot of resting MBF
measurements from one volunteer (top row of Table 4.1) as a function of the number of voxels
averaged. For this particular subject, the total number of voxels over six breath-holds was 483
and measured SNR was 74. With these parameters, the calculated probability of measured MBF
error being < 0.1 ml/g/min was 96% based on thermal-noise only, but was 94% when accounting
for physiologic noise.
52
Age,
gender
MBF
(ml/g/min)
SNR
(B/ σ
N
)
ROI size
(cm
3
)
Thermal noise only Physiological noise
σ
MBF,T
(ml/g/min)
Confidence
(%)
σ
MBF,P
(ml/g/min)
Confidence
(%)
29 M 0.70 74 3.50 0.046 96 0.050 94
31 F 0.79 56 1.35 0.091 71 0.086 74
28 F 1.05 81 2.10 0.057 91 0.208 35
33 M 1.10 43 2.55 0.089 71 0.172 42
28 F 1.10 76 3.47 0.044 97 0.107 63
34 M 1.11 67 2.35 0.067 84 0.139 51
31 M 1.15 50 2.45 0.092 70 0.314 24
34 M 1.21 63 6.53 0.039 99 0.191 38
31 M 1.26 68 2.42 0.061 88 0.152 47
33 M 1.30 43 3.73 0.082 76 0.265 28
32 M 1.52 81 4.08 0.050 94 0.410 18
35 M 1.54 68 3.00 0.053 93 0.227 32
35 M 1.68 51 3.12 0.069 83 0.171 42
29 M 1.76 56 2.92 0.073 81 0.412 18
31 M 2.14 82 2.83 0.058 90 0.372 20
Avg. 1.29 64 3.09 0.065 86 0.218 42
Table 4.1. MBF measurements in healthy volunteers at rest. Columns contain the measured MBF,
SNR, size of the septal ROI, standard deviation of measured MBF, and confidence (probability of
measured MBF error being < 0.1 ml/g/min) from fifteen scans of healthy subjects. Data are sorted
in ascending order according to measured MBF.
Figure 4.3 shows six MBF measurements averaged for each breath-hold in time order
from the same subject. As specified earlier, the order of control and tagged image acquisitions
alternated, with {tagged, control} in the odd breath-holds and {control, tagged} in the even
breath-holds. Note that the MBF measurements from {tagged, control} pairs are always higher
than those from {control, tagged} pairs. This error appears to stem from incomplete static tissue
53
cancellation due to time delay of 6 seconds, which is insufficient for the full relaxation of
longitudinal magnetization. Based on Bloch simulation and Eq. (4.1), the MBF error caused by a
6 second time delay is ±0.24 ml/g/min for the heart rate of this subject, which appears consistent
with the pattern of oscillation seen in Figure 4.3. This effect is best seen in this particular dataset
because it exhibited the lowest temporal noise of our 15 scans.
Figure 4.2. Measured resting MBF as a function of the number of voxels averaged. Roughly 80
voxels were segmented for each breath-hold, resulting in a measurement of 0.70 ml/g/min based
on 6 breath-holds (right-most data point). All other data points were simulated by considering
subsets of the 6 breath-holds.
54
Figure 4.3. Six MBF measurements averaged for each breath-hold with alternating
control/tagging image order. The solid line in the middle corresponds to the MBF value averaged
over all voxels from six breath-holds (0.70 ml/g/min), and two dotted lines represent estimated
upper (0.70+0.24 ml/g/min) and lower (0.70-0.24 ml/g/min) bounds of signal deviation due to
incomplete static tissue relaxation.
4.2.2 Dependence on Inflow
Table 4.2 contains MBF measurements from five subjects where the thickness of the control
image inversion slab was modified to include just the imaging slice, the entire left ventricle, and
everything. In all subjects, thickening the inversion slab reduced measured MBF. The average
change in MBF with inversion of LV and everything with respect to regular MBF were -68% and
-92% respectively. This matched our expectation that excluding blood in the coronaries from
tagging would result in lower estimated MBF than that from including all out-of-slice blood, and
supports the notion that the ASL signal measured by this approach is dominated by inflow.
55
Table 4.2. MBF measurements (in ml/g/min) with different slab-selective inversion thicknesses
(3 cm for slice, 12 cm for LV, and nonselective for everything).
4.2.3 Modulation with Mild Stress
Table 4.3 contains MBF measurements from seven subjects at rest and with two forms of mild
stress, passive leg elevation and handgrip at 40% of MVC. The average heart rate change from
rest was -1% with leg elevation and 0.3% with handgrip. MBF measurements during leg elevation
and handgrip were higher than MBF measurement at rest in five subjects, comparable in one
subject, and lower in one subject. The average increases in MBF were 30% and 29% with leg
elevation and handgrip respectively. These results are comparable to those in Refs. [12] and [51]
where ABF during passive leg elevation increased by roughly 16%, and MBF during handgrip
increased by roughly 35%. The 29% increase of MBF with handgrip is statistically significant
(p=0.045) while the 30% increase of MBF with leg elevation is not statistically significant
(p=0.157), largely due to the outlier result from the fourth volunteer.
Age, gender FAIR
Tag excludes LV Null tag
MBF
Change
MBF
Change
31 M
28 F
29 M
32 M
34 M
1.15
1.10
1.76
1.52
1.11
0.34
0.61
0.79
0.12
0.24
-70%
-45%
-55%
-92%
-79%
0.16
0.10
-0.34
0.66
-0.07
-86%
-91%
-119%
-57%
-106%
Avg. 1.33 0.42 -68% 0.10 -92%
56
Age, gender
Resting MBF
(HR)
Leg elevation Handgrip
MBF (HR)
MBF
Change
MBF (HR)
MBF
Change
29 M
31 F
28 F
31 M
32 M
29 M
32 M
0.70 (62)
0.79 (50)
1.05 (68)
1.26 (64)
0.98 (68)
0.99 (66)
0.47 (69)
0.94 (60)
1.24 (52)
1.74 (71)
0.91 (68)
1.01 (64)
1.03 (56)
0.83 (71)
34%
58%
65%
-28%
3%
4%
74%
0.93 (62)
1.19 (52)
1.49 (75)
1.11 (64)
1.24 (67)
0.96 (60)
0.80 (68)
32%
51%
41%
-12%
27%
-3%
68%
Avg. 0.89 (64) 1.10 (63) 30% 1.10 (64) 29%
Table 4.3. MBF measurements (in ml/g/min) at rest, with passive leg elevation, and with
isometric handgrip exercise, and heart rates (HR, in bpm) for each study. The average heart rate
change from rest was -1% with leg elevation and 0.3% with handgrip.
4.3 Discussion
This study demonstrates that subtractive myocardial ASL at 3 Tesla with pulsed tagging and
SSFP imaging yields a distinct and measurable signal in human myocardium. In healthy
volunteers, this signal is consistent with MBF ranges established using
13
N-ammonia PET, and
shows a tendency to be inflow-dependent and modulate as expected with mild forms of stress.
This study supports the feasibility of quantifying MBF in humans non-invasively using arterial
spin labeling.
57
This study has also determined that myocardial ASL MRI is limited by SNR. Although
normal MBF is roughly twice as high as normal cerebral blood flow (CBF) [15, 44], the intrinsic
myocardial SNR when using modern 8-channel cardiac coils is roughly 3 times lower than gray
matter SNR when using modern 8-channel head coils (measured on our 3 T scanner in 3 healthy
volunteers), primarily due to the larger noise-producing volume. This results in the need for a
higher number of signal averages in myocardial ASL, compared to brain ASL, in order to achieve
diagnostically useful confidence. Furthermore, because it is not practical to use 50+ repetitions in
myocardial ASL (equal to the number of breath-holds), spatial signal averaging is also required.
The current spatial resolution of our MBF measurements is roughly 3 cm
3
(much larger than the
resolution of the base images, 2.5 x 2.5 x 10 mm
3
) due to this need for spatial signal averaging.
As an alternative to voxelwise myocardial perfusion mapping, ROI-based analysis
appears to be feasible, with segmental resolution similar to the standard 17-segment model [14].
Figure 4.4 contains a voxelwise perfusion map from one breath-hold, and a ROI-based perfusion
map from 20 breath-holds for comparison, both from the same healthy volunteer that exhibited
moderate physiologic noise ( σ
MBF,P
= 0.066 ml/g/min for the entire myocardium). For the ROI-
based perfusion map, only endocardial and epicardial borders from each breath-hold were
delineated manually based on the difference image, and the circumference of the LV was
automatically divided into eight segments. Signal averaging was performed within each segment
over multiple breath-holds, yielding one MBF estimate that represents each segment. This way,
58
even with the rather low SNR of myocardial ASL, the current approach may provide a perfusion
map that is of diagnostic value, without requiring image registration for signal averaging.
Improvements in SNR efficiency will of course benefit ROI-based perfusion mapping,
and will enable shorter scans, smaller ROIs, and tighter confidence intervals. Myocardial SNR
is expected to be increased 50-75% with emerging 16 and 32 channel cardiac coils [35].
Furthermore the SNR of myocardial ASL can be expected to improve with the development of
more efficient tagging schemes (specific to the heart) and with the development of image
acquisition methods optimized for detecting the ASL signal, which both remain as future work.
Physiological noise (sometimes called temporal noise) is a crucial factor in myocardial
ASL mostly due to breathing motion. Our preliminary estimates suggest that physiological noise
in these studies was approximately 3.4 times higher than the level of thermal noise, which would
suggest the use of far more than 6 breath-holds. However, the standard deviation of the
physiological noise distribution over different subjects was also 6.5 times higher than that of
thermal noise only. This indicates that the number of breath-holds needed for confidence in the
derived MBF measurement will vary significantly across subject, while thermal noise is relatively
consistent over different subjects and can yield < 0.1 ml/g/min error with 86% confidence with 6
breath-holds. This provides strong motivation for future investigation of background suppression
(BGS) schemes and novel tagging schemes that have the potential to reduce physiological noise.
One important drawback of FAIR tagging (or any slab selective tag of the proximal
aorta in the short axis plane) is that the tagged region includes blood in the left atrium and
59
possibly a portion of the left ventricle. This results in spurious ASL signal in the LV blood pool
that may interfere with measurement of the myocardial ASL signal. The effect is most readily
apparent in difference images, where the LV blood pool is typically 30-40 times brighter than
adjacent myocardium. One possible solution is to apply diffusion sensitizing gradients (DSG)
with low diffusion weighting to dephase blood flow [68] immediately prior to imaging
acquisition in both control and tagged images. While this is a simple solution to suppress signal
from the LV blood pool, it has a disadvantage that the tagged blood in myocardium experiences
signal attenuation due to T
2
relaxation and motion related dephasing, leading to SNR loss. LV
blood in the ASL difference image can also be suppressed by more sophisticated tagging scheme
such as one that selectively excludes the left atrium and left ventricle while tagging the proximal
aorta. Suppression of the LV blood signal is likely to reduce physiological noise and allow the
use of larger myocardial ROIs while avoiding partial volume effects in voxels along the
endocardial border.
Unlike brain ASL, image acquisition in the steady state is difficult for myocardial ASL
because the duration of breath-holds is limited and the heart rate can vary during a scan session.
We chose a multiple breath-hold strategy, where each breath-hold contained a pair of control and
tagged images with time delay of 6 seconds between them. In order to compensate for MBF
measurement error caused by incomplete relaxation, we alternated the order of control and tagged
images, and used an even number of breath-holds. It is possible to use longer time delays between
tagged and control images (e.g. 10 sec) to provide more complete relaxation, however this
60
increases the duration of each breath-hold, which increases the possibility of mis-registration and
changes in the T
1
of blood due to deoxygenation. In our experience, alternating the order of the
tagged and control images proved to be a simple and effective way to mitigate error caused by
incomplete relaxation. Ultimately, free breathing methods employing advanced prospective
gating and tracking may be necessary for routine application of myocardial ASL in patients.
Brain ASL has evolved over the past 15-20 years, and many important innovations can
be applied to myocardial ASL. For instance, BGS has proved useful for the reduction of
physiological noise in brain ASL [24, 27, 100, 103], and may also be beneficial in myocardial
ASL where breathing motion is significant. Also, pseudocontinuous tagging [18, 101], which
provides the highest tagging efficiency among existing brain ASL methods, may be applied to
myocardial ASL, as a means to improve SNR. In this case, the spatial placement and the timing
of flow-driven tagging pulses should be optimized to the coronary artery geometry and pulsatile
flow pattern, in order to produce the highest tagging efficiency.
The validation of myocardial ASL in humans is complicated by cardiac and respiratory
motions, and the lack of an established ground truth with which to compare the results from
proposed method. This is quite different from animal studies, where sedation is possible and
results can be compared with invasive microsphere-based blood flow measurement. A definitive
validation of proposed methods against a gold standard such as
13
N-ammonia PET would be a
natural follow up to this study.
61
In summary, we have demonstrated the feasibility of myocardial blood flow assessment
in humans, using arterial spin labeling at 3 Tesla. MBF measurements in healthy volunteers at
rest were consistent with MBF ranges established by the quantitative PET literature. These MBF
measurements were inflow-dependent, and increased by 30% and 29% with passive leg elevation
and handgrip stress respectively, as expected. This study also demonstrates that myocardial ASL
is limited by SNR, and that accurate perfusion assessment with the technique is currently limited
to region-of-interest analysis. Sources of physiological (non-thermal) noise and suppression
techniques remain to be explored. There is substantial opportunity for improved tagging and
imaging methods that may strengthen the myocardial ASL signal while reducing temporal noise.
62
Chapter 5
Measurement of Changes in Myocardial Perfusion with
Vasodilatation
During stress induced by exercise, pharmacological stress, or vasodilatation, the MBF
measurements are multiple times higher than those at rest. While resting MBF does not decrease
until diameter of coronary arteries is reduced by 85%, perfusion reserve begins to decrease with
stenosis of 30-45% where perfusion reserve is calculated as the ratio of MBF during stress to
MBF at rest. Perfusion reserve has been proposed as an index of severity of a coronary lesion
because it is impaired by CAD before the changes in resting MBF become manifest [30, 31]. In
this chapter we applied myocardial ASL to the measurement of perfusion reserve in nineteen
patients scheduled for cardiac magnetic resonance (CMR). Data was collected at rest and during
intravenous infusion of adenosine [3, 95, 97]. We report the first perfusion reserve measurements
with myocardial ASL that indicate that myocardial ASL is capable of detecting clinically relevant
increases in MBF with vasodilatation [114].
63
5.1 Methods
5.1.1 Study Design
Nineteen patients (aged 65 ± 11 years, 14 women / 5 men) were recruited, among those who were
suspected of having CAD and scheduled for stress CMR exams at the Loma Linda University
Heart and Imaging Center. This study was approved by our Institutional Review Board, and each
patient provided written informed consent. Rest and stress myocardial ASL scans were
incorporated into the routine CMR protocol as showed in Figure 5.1. All ASL scans were
performed before first-pass perfusion imaging to prevent residual gadolinium from reducing the
T
1
of blood and confounding the computation of MBF from ASL images. Each ASL scan
required six breath-holds and could be comfortably performed in 3 minutes. In most patients, two
rest ASL scans were performed and averaged because the scan time was not limited at rest. Then
the adenosine infusion was started using standard dosage (0.14 mg/kg/min). After 2 minutes, the
stress ASL scan was performed. The average heart rates during rest and stress ASL scans were
recorded independently. Immediately after the stress ASL scan, CMR first-pass perfusion was
performed between minutes 5 and 6 of the adenosine infusion (total infusion duration = 6
minutes). During the infusion, the medical status of the patient was monitored by a nurse, and the
patient was asked frequently if he/she felt any adverse symptoms of adenosine. The rest of the
64
CMR imaging protocol remained unchanged, and included late gadolinium enhancement and
cardiac function CINE imaging. Based on the CMR results, patients who were suspected to have
severe ischemic heart disease also underwent X-ray coronary angiography within one month.
Figure 5.1. Modified stress CMR protocol.
Myocardial ASL scans are performed at rest and
during adenosine infusion, both prior to first-pass
imaging to avoid confounding effects of the
contrast agent (lowering the blood T
1
). The CMR
protocol after completion of adenosine infusion is
unchanged and includes viability and function
imaging.
Rest ASL
Rest ASL
Stress ASL
Wait
Function (CINE)
Late gadolinium
enhancement
Wait
Rest first-pass
Stress first-pass
5
8
11
13
16
37
32
22
17
38
Start adenosine
infusion
Stop adenosine
infusion
Minute
Localizer and
scout scan
0
65
5.1.2 Imaging Methods
Imaging method of myocardial ASL was the same as described in Chapter 4. A single mid short-
axis slice was scanned using FAIR tagging and balanced SSFP imaging [108]. Tagging was
achieved by applying nonselective and selective adiabatic inversions. Imaging was performed
with snap-shot two-dimensional Fourier transform (2DFT) SSFP acquisition with TR = 3.2 ms
(total duration = 313 ms), flip-angle = 50°, matrix size = 96 x 96 over 24-32 cm isotropic field of
view (FOV), full k-space acquisition, and slice thickness = 1 cm. Parallel imaging was not used.
Both tagging and imaging were performed at mid-diastole using ECG gating. The trigger delay
was determined from a CINE scout scan. Each ASL scan required six breath-holds, with one pair
of tagged and control images acquired in each breath-hold. Each breath-hold lasted 10 seconds,
and the total scan time was 3 minutes including breaks.
The routine CMR first-pass perfusion sequence covered four short-axis slices using a
saturation recovery fast gradient echo (FGRE) pulse sequence. The imaging parameters were: TR
= 6.5 ms, flip-angle = 10°, matrix size = 128 X 128, and slice thickness = 1 cm. The intravascular
contrast-agent (Gd-BOPTA, MultiHance, dosage: 0.05 mmol/kg) and saline flush (20 ml) was
injected at a rate of 5 ml/s. The total scan time was 54 sec and the subjects were instructed to hold
their breath as long as possible, and then initiate shallow breathing.
66
All MRI experiments were performed on a GE Signa 3.0 T EXCITE HDx system (GE
Healthcare, Waukesha, WI, USA) with gradients supporting 40 mT/m amplitude and 150
mT/m/ms slew rate. The body coil and an 8-channel cardiac array coil were used for RF
transmission and signal reception, respectively. Coronary angiograms were performed using the
standard techniques and tomographic images were obtained from multiple planes.
5.1.3 Data Analysis
Endocardial and epicardial borders of the left ventricle were manually drawn for each tagged and
control image. For segment-based analysis, the myocardium was divided into six radial segments
(anterior, anteroseptal, inferoseptal, inferior, inferolateral and anterolateral) [14], and MBF was
calculated using Eq. 4.1 [12] after signal averaging in each segment. The standard deviation of
the physiological noise affecting each scan was estimated using six associated measurements (one
per breath-hold). Perfusion reserve was computed as MBF
stress
/MBF
rest
. To generate perfusion
reserve maps, each MBF map was reconstructed with 50 radial segments, and then smoothed by
convolving with a 13-point Hamming window.
CMR first-pass images and X-ray angiograms were read by two experienced
cardiologists. For first-pass images, all six myocardial segments from four slices were examined
67
for perfusion defects. Coronary artery narrowing was visually estimated using electronic calipers.
Significant stenosis was defined as >70% diameter narrowing.
5.2 Results
Among the nineteen patients, the mean number of risk factors was 3.4, with 100% hypertension,
79% hypercholesterolemia, 53% age over 65, 47% diabetes mellitus, and 26% male. Eleven out
of the nineteen patients were found to be “normal” based on having no visible perfusion defect on
first-pass MRI, and no significant obstruction on coronary angiography (if it was performed).
Five patients had CAD confirmed by X-ray angiography, comprising two patients with single-
vessel disease and three patients with three-vessel disease. Three remaining patients showed
perfusion defect on first-pass images but no angiographically significant stenosis.
5.2.1 Normal Subjects
Figure 5.2 contains global MBF measurements based on ASL at rest and stress from the eleven
“normal” subjects. Each bar represents the average MBF across the whole myocardium in the
slice. The error bars correspond to plus or minus one standard deviation of the physiological noise,
68
-1
0
1
2
3
4
5
6
7
8
9
12 34 5 6 7 8 9 10 11
MBF (ml/g/min)
Rest
Adenosine
HR =
(93, 99)
HR =
(57, 71)
HR =
(72, 71)
HR =
(65, 66)
HR =
(57, 89)
HR =
(69, 78)
HR =
(66, 77)
HR =
(49, 69)
HR =
(73, 90)
HR =
(50, 77)
HR =
(56, 75)
Normal Patient
Figure 5.2. MBF estimates at rest (blue) and during adenosine infusion (purple), in eleven
patients with no significant perfusion defect on first-pass imaging, and no significant disease on
coronary angiography. The average MBF was 1.09 ± 0.70 ml/g/min at rest and 3.92 ± 1.08
ml/g/min with adenosine, yielding an average perfusion reserve (MBF
stress
/MBF
rest
) of 4.29. This
increase in MBF was found to be statistically significant based on Student’s paired t-test
(p=0.00002). Error bars represent plus or minus one standard deviation of the measured
physiological noise. The average physiological noise during adenosine infusion was 2.6 times
larger than the average physiological noise at rest.
σ measured for each scan. The average MBF across subjects was 1.09 ± 0.70 ml/g/min at rest and
3.92 ± 1.08 ml/g/min during adenosine infusion, yielding an average perfusion reserve
(MBF
stress
/MBF
rest
) of 4.29. Subjects with |MBF
rest
|/ σ
rest
< 2.0 were excluded from perfusion
reserve analysis because excessive noise in the denominator of the perfusion reserve equation can
produce substantive errors in the estimated perfusion reserve. This resulted in exclusion of patient
9 in Figure 5.2. Based on a Student’s paired t-test, the MBF increase with adenosine was found to
69
be statistically significant, with p=0.00002. The average standard deviation of physiological noise
across subjects for the rest ASL scans was 0.25 ml/g/min, which is comparable to 0.21 ml/g/min
measured in healthy volunteers in Ref. [108]. The average standard deviation of physiological
noise for the stress ASL scans was 0.64 ml/g/min, which is roughly 2.6 times larger than that of
the physiological noise at rest. The average heart rate increased by 22% from 64 bpm at rest to 78
bpm during adenosine infusion.
5.2.2 Comparison of Normal and Ischemic Segments
Table 5.1 summarizes the comparison of normal myocardial segments from the eleven normal
patients and the most ischemic myocardial segments from the five patients with abnormal first-
pass perfusion and angiographically significant stenosis. All six mid short-axis segments [14]
were included for the normal patients. The most ischemic segments in the patients with CAD
were determined by the most significant lesion on the angiograms. Segments with |MBF
rest
|/ σ
rest
<
2.0 were excluded for the same reasons mentioned above. The average perfusion reserve was 3.00
± 1.66 in normal segments and 1.54 ± 1.15 in ischemic segments. This difference in perfusion
reserve was found to be statistically significant, with p=0.0419, based on a Student’s unpaired t-
test.
70
Table 5.1. Comparison of normal myocardial segments from the normal patients and the most
ischemic myocardial segments from the patients with angiographically-significant CAD. *The
difference in perfusion reserve between normal and ischemic segments was statistically
significant (p=0.0419), based on Student’s unpaired t-test.
5.2.3 Subjects with Single-vessel Disease
Figure 5.3 contains perfusion reserve maps and coronary angiograms from the two patients with
single-vessel disease. Lowered perfusion reserve in the anterior wall is consistent with total
occlusion of the LAD coronary artery (red arrows), and lowered perfusion reserve in the
inferoseptum is consistent with total occlusion of the RCA (blue arrows). The inferior wall in the
patient with LAD disease and the lateral wall in the patient with RCA disease also showed
Normal segments Ischemic segments
Subjects
Number of patients 11 5
Age 66 ± 10 yrs 62 ± 13 yrs
Sex 2M, 9F 2M, 3F
Risk factors Hypertension 11 5
Hypercholesterolemia 8 4
Age over 65 6 3
Diabetes mellitus 4 3
Male 2 2
Segments Number of segments included 55 6
Perfusion reserve (MBF
stress
/MBF
rest
) 3.00 ± 1.66* 1.54 ± 1.15*
71
somewhat lowered reserve, and it is not clear from the angiogram whether these reflect real
perfusion deficit or merely measurement error due to high noise.
2.5
2
1.5
1
LV RV
LV RV
A
D C
2.5
2
1.5
1
B
Figure 5.3. Myocardial ASL perfusion reserve maps and X-ray angiograms from the first two
patients with single-vessel CAD. A, B: patient with total LAD occlusion, C, D: patient with total
RCA occlusion. Myocardial regions with lowered perfusion reserve are consistent with the
territories of occluded vessels (see arrows).
72
5.3 Discussion
In this study, we applied myocardial ASL sequences to nineteen patients scheduled for rest-stress
CMR. In patients who had no visible myocardial perfusion defect on first-pass imaging and no
significant obstruction on coronary angiography, we found a statistically significant increase in
global MBF measurements with adenosine infusion compared to at rest. Adenosine is a widely
used vasodilator that produces large increases in MBF for normal myocardium. This increase has
been documented to be 4.00 ± 1.10 times based on
15
O-H
2
O PET [47], which is comparable to the
ASL results in this study. The present study demonstrates, for the first time, that myocardial ASL
is able to detect clinically-relevant increases in MBF with vasodilatation.
This study also demonstrated the potential for rest-stress myocardial ASL to detect
aniographically significant CAD. We found a statistically significant difference in measured
perfusion reserve between normal myocardial segments and the most ischemic myocardial
segments identified by X-ray angiography. We are in the process of accumulating a much larger
cohort that spans the spectrum of CAD, from which we will be able to determine the ability of
rest-stress myocardial ASL to detect angiographically significant CAD.
The current implementation of myocardial ASL suffers from greater noise and lower
spatial resolution compared to state-of-the-art first-pass imaging. These are not fundamental
limitations of the ASL approach, and may be resolved with technical improvements to the
73
imaging methodology. Even in its present form, myocardial ASL could be of value in evaluating
patients with end-stage renal disease (ESRD) who are not candidates for first-pass imaging due to
the risk of nephrogenic fibrosing dermopathy. There are roughly 340,000 ESRD patients in the
United States [92] who require heart disease assessment every 6 to 12 months while awaiting
kidney transplant, and most patients are on the wait-list for 4 to 7 years. These patients stand to
benefit significantly from a new MPI approach that does not require contrast agents.
Spatial heterogeneity of MBF is typically represented by relative dispersion (RD,
SD/mean) and has been observed in humans and animals [15, 21, 43, 50, 60]. It was reported to
be 0.13 with 4 segments of myocardium (anterior, lateral, septal, and inferior walls) using PET in
humans [15], and 0.26 with 8 segments of myocardium using microspheres in baboons [50]. RD
from our eleven normal patients was found to be 0.84 with 6 myocardial segments, implying
relatively high noise in our measurements. The intrinsic spatial heterogeneity of MBF may be
attributed to different metabolic needs, oxygen demand, and neural regulatory modification in
different regions [21, 43, 60]. Transit delay in ASL techniques can also introduce methodological
spatial heterogeneity depending on vascular geometry.
We examined the spatial correlation of physiological noise in our nineteen patients.
Figure 5.4 shows standard deviation of physiological noise as a function of ROI size, averaged
across the subjects in resting scans. If physiological noise was not spatially correlated at all, the
standard deviation should be inversely proportional to the square root of ROI size. This plot is
74
Figure 5.4. Standard deviation of physiological noise as a function of ROI size, averaged across
19 patients in resting scans. If physiological noise was not spatially correlated at all, the standard
deviation should be inversely proportional to the square root of ROI size (as indicated by
“Reference”).
denoted by “Reference” in Figure 5.4. The discrepancy between measured physiological noise
and “Reference” demonstrates spatial correlation in physiological noise.
In this work, we invoked the widely-used kinetic model [12] to convert ASL signal
amplitudes to MBF estimates. While it is known that ASL signal amplitude is proportional to
tissue blood flow, there are other factors that may influence the quantitative accuracy of the
approach. One natural follow-up to this study would be to compare ASL estimates of MBF
against an independent gold-standard, such as quantitative PET, in humans.
75
Myocardial ASL is also limited by SNR, and requires signal averaging spatially and
over multiple repetitions to generate meaningful data. We previously found that physiological
noise (which includes all variations over time) is the critical factor that determines the sensitivity
to MBF [108]. Patient 9 (see Figure 5.2), represents the worst case from the present study, which
suffered from physiological noise three times higher than the average across subjects, and
resulted in a negative resting MBF measurement. Sources of physiological noise may include
metabolic fluctuation, respiratory and cardiac motion, and subject discomfort. The fact that
physiological noise was 2.6 times larger during adenosine infusion suggests that subject motion
or discomfort may be a significant source. We are currently investigating several potential
sources of physiological noise and are evaluating solutions that involve improved pulse sequence.
76
Chapter 6
Attempts to Reduce Physiological Noise
Myocardial perfusion imaging using ASL shows promise but produces high physiological noise.
High physiological noise reduces the measurement confidence, and thus delays its transition to
clinical use. We determined that physiological noise reduction is critical to improving the
robustness of myocardial ASL, and explored three different approaches to reduce physiological
noise. In this chapter, we describe the hypothesis, method, and results with each attempt.
One potential source of the physiological noise we suspected was the error caused by
static tissue mis-registration between control and tagged images. To reduce this error, we utilized
background suppression (BGS) which has been widely used in brain ASL as a means to reduce
such physiological noise [110].
Another potential source of physiological noise was the large apparent ASL signal in the
blood pool due to inadvertent tagging of blood in the LA and/or LV. A high blood pool signal
adjacent to myocardium may interfere with MBF measurements because of partial voluming and
k-space truncation, and therefore we hypothesized that the irregular variation of blood pool signal
77
caused the variation in myocardial ASL signal [108]. We applied a new pulsed tagging method
using a 2D spatially selective adiabatic inversion of the proximal aorta, and compared the results
with those using conventional 1D spatially selective tagging [111].
Lastly, we considered any variation during each breath-hold as a source of physiological
noise. We used pre-saturation of the imaging volume and reduced the duration of each breath-
hold from 10-11 second to 3-4 second [59]. To achieve saturation residue negligible enough for
myocardial ASL, we implemented B
1
-insensitive pre-saturation of myocardium using weighted
sub-pulses that were optimized for measured B
1
variation [90].
6.1 Myocardial Background Suppression
6.1.1 Methods
We incorporated BGS pulse into our FAIR-SSFP sequence as illustrated in Figure 6.1. BGS pulse
comprised one slab-selective saturation pulse and one nonselective inversion pulse. The timing of
this inversion pulse was adjusted in real-time to achieve myocardial BGS at the imaging time
regardless of heart rate. Experiments were performed on a 3 T scanner (Signa EXCITE, GE) with
an 8-channel cardiac array coil. Regions of septal myocardium on mid-short axis were manually
segmented for each breath-hold. MBF was estimated using Buxton’s general kinetic model [12].
78
Figure 6.1. Cardiac gated FAIR – SSFP pulse sequences A: without and B: with myocardial
BGS.
The standard deviation of the physiological noise was calculated based on measurements from six
breath-holds with an assumption of Gaussian model.
6.1.2 Results
Table 6.1 summarizes the results from all ten scans. Using BGS, the myocardial tissue signal was
reduced from 32% to 6% (yellow columns), MBF estimates decreased by 44%, and standard
deviation of the physiological noise increased slightly (blue columns). Using a paired t-tests, the
Blood (control)
Blood (tagged)
Myocardium
Control: selective INV
Tagged: non-sel INV
Fat Sat
Initial Prep
SSFP
IMAG
RR
Control: selective INV
Tagged: non-sel INV Fat Sat
Initial Prep
SSFP
IMAG
RR
slab-sel SAT non-sel INV
1
0.5
-0.5
0
-1
1
0.5
-0.5
0
-1
Blood (control)
Blood (tagged)
Myocardium
A B
79
Table 6.1. Average myocardial signal on control and tagged images with respect to equilibrium
signal, MBF estimate (in ml/g/min), and standard deviation of physiological noise (in ml/g/min).
decrease in measured MBF was found to be statistically significant (p=0.0004) while the change
in standard deviation of the physiological noise was found to be statistically insignificant
(p=0.2697).
6.1.3 Discussion
While cardiac-gated FAIR tagging methods already have relatively low myocardial signal in
control and tagged images due to inversion of imaging volume, myocardial BGS pulses were able
Scan
FAIR FAIR with BGS
Myo.
signal (%)
MBF SD of p. noise
Myo.
signal (%)
MBF SD of p. noise
1 27 0.84 0.278 3 0.79 0.290
2 31 0.97 0.145 6 0.61 0.286
3 52 0.67 0.052 12 0.26 0.167
4 43 0.85 0.104 5 0.33 0.191
5 41 0.98 0.181 6 0.29 0.036
6 32 0.66 0.055 4 0.14 0.092
7 34 0.78 0.155 5 0.33 0.245
8 23 0.66 0.133 4 0.67 0.124
9 38 1.02 0.087 9 0.69 0.095
10 22 1.04 0.136 5 0.65 0.110
Avg. 32 0.85 0.133 6 0.47 0.164
80
to reduce this further by 82%. Results from ten scans show that myocardial BGS produced no
significant change in physiological noise, which suggests that static tissue mis-registration in the
subtraction is not a significant source of physiological noise in human myocardial ASL. However,
this only implies that incomplete subtraction of myocardial signal is not a dominant source. Blood
pool signal is not affected by BGS pulses, and the signal leakage from blood pool to myocardium,
if any, can be mis-matched due to control/tagged image mis-registration, leading to high
physiological noise and measurement errors. Blood pool signal as a potential source of noise is
discussed in the next section. Despite insignificant change in physiological noise, measured MBF
was significantly lower with myocardial BGS. This may be due to the long saturation duration
(20ms) or corruption of saturation caused by preceding inversion pulse. This remains to be
determined.
6.2 Blood Pool Signal Suppression Using Pulsed 2D Tagging
6.2.1 Methods
Our approach used 2D selective inversion pulses oriented perpendicular to a standard three-
chamber view, tagging blood in the proximal aorta while leaving the LA and LV undisturbed. We
utilized the strategy of Conolly et al [17] to design 2D spatially selective adiabatic inversion
81
pulses, and further reduced the pulse duration and peak B
1
using the VERSE transform [16].
Figure 6.2 shows our design of RF pulse and associated gradients. The composite pulse used 24
subpulses, each a small tip SLR pulse [72] with a time-bandwidth product of 3 and a duration of
0.5 ms prior to VERSE transformation. The overall sech envelope [88] had shape parameters μ =
2.5 and b = 800. The gradient waveform used a flyback EPI trajectory for insensitivity to flow
effects and timing errors. The overall duration of the pulse was 23 ms, which is short compared to
the T
2
of arterial blood at 3 T (approx. 141 ms) [7].
The cardiac gated pulse sequence is illustrated in Figure 6.3. Pulsed inversion occurs
immediately after the aortic valve closes, and imaging is centered at mid-diastole in the following
heartbeat. The timing of both were determined by a CINE scout scan. Imaging protocol was the
same as in FAIR-SSFP sequence. Each pair of control and tagged images was acquired 6 s apart
during a single breath-hold, and six breath-holds (10-12 sec each) were performed for signal
averaging. Image acquisition was performed using a snapshot 2DFT balanced SSFP sequence
with 3.2 ms TR and 50° flip angle. Experiments were performed in 7 healthy volunteers on a 3
T scanner (Signa EXCITE, GE) with an 8-channel cardiac array coil. For a comparison,
conventional pulsed ASL using 1D adiabatic inversion was performed as well in the same
subjects with the same imaging parameters.
Regions of septal myocardium were manually segmented for each breath-hold. We
assumed that the 2D inversion tags all the blood at the root of the aorta that will travel into the
coronaries during the following diastole, and hence used the equation
82
(6.1)
derived from Buxton’s general kinetic model [12] to arrive at the average perfusion rate over one
R-R interval, where C, T, α, RR, Ti, and T
1
refer to the mean myocardial signal in the control and
tagged images, inversion efficiency, R-R interval, inversion time, and T
1
of blood, respectively.
Figure 6.2. 2D selective adiabatic
inversion pulse. (23 ms duration,
0.16 G peak B
1
+).
Figure 6.3. Cardiac gated “pulsed”
myocardial ASL sequence.
0 2 4 6 8 10 12 14 16 18 20
−0.2
−0.1
0
0.1
0.2
RF magnitude (G)
0 2 4 6 8 10 12 14 16 18 20
−200
−100
0
100
200
RF phase (degree)
0 2 4 6 8 10 12 14 16 18 20
−3
−2
−1
0
1
2
Time (ms)
Gradient (G/cm)
Gz
Gy
Pulsed inversion
Fat Sat
Initial Prep
Diastasis
SSFP
IMAG
Diastasis
Aortic valve
closes Ti
ρ α ⋅ ⋅ ⋅ ⋅
−
=
−
1
/
2
T Ti
e RR C
T C
MBF
83
6.2.2 Results
Figure 6.4 illustrates in-vivo 1D and 2D tag profiles and corresponding ASL difference images
for one representative subject. Tag profiles were measured by dividing two snapshot images
(2DFT gradient echo, center-out view order); images with and without inversion pulse
immediately prior to imaging. Table 6.2 contains the results from all subjects. The average
inversion efficiency of 2D tagging was 92%, which was comparable to 93% with 1D tagging. The
residual LV signal was reduced from 50% to 5% using 2D tagging. We estimated MBF and the
standard deviation of the physiological noise based on Gaussian model. Using 2D tagging,
standard deviation of the physiological noise decreased by 44% and this difference was found to
be statistically significant based on paired t-test with p = 0.0476. MBF measurements were also
found to be reduced by 66% with 2D tagging.
Figure 6.4. In-vivo tag profiles for A:
1D tagging and B: 2D tagging of the
proximal aorta. Identically windowed
difference images for C: 1D tagging
and D: 2D tagging.
84
Table 6.2. Inversion efficiency across the proximal aorta, residual LV signal ((C-T)/C on LV
blood), MBF measurements (in ml/g/min), and SD of physiological noise (in ml/g/min) for 1D
and 2D tagging schemes.
6.2.3 Discussion
In this study, 2D spatially selective adiabatic inversion pulses were used to efficiently tag blood
in the proximal aorta while leaving the LA and LV unperturbed. These pulses achieved inversion
efficiency comparable to that of 1D inversion, and reduced the physiological noise in the
resulting MBF measurements, suggesting that the spurious blood pool signal is an important
source of physiological noise in myocardial ASL. Reduced MBF estimates may reflect the
possibility that high blood pool signal with 1D tagging may result in overestimated MBF. This
scan
1D tagging 2D tagging
Inv. effi. LV signal MBF
SD of
p. noise
Inv. effi. LV signal MBF
SD of
p. noise
1 96% 84% 1.87 0.404 92% 2% 0.59 0.147
2 91% 31% 0.36 0.125 94% 4% 0.13 0.094
3 99% 36% 1.64 0.162 98% 2% 0.43 0.117
4 97% 33% 0.83 0.164 94% 5% 0.11 0.045
5 93% 47% 1.35 0.174 92% 8% 0.82 0.129
6 88% 69% 1.89 0.138 82% 8% 0.63 0.156
7 87% 48% 1.65 0.175 94% 9% 0.58 0.066
Avg. 93% 50% 1.37 0.192 92% 5% 0.47 0.108
85
remains to be determined. Unlike FAIR tagging, this method requires extra effort to localize
proximal aorta and place a relevant size of tag onto it. The direction of tagging block should also
be carefully determined because the 2D selective inversion pulse creates replicas along one
direction and these can perturb the upstream blood in LA or lung. The performance of these steps
may vary for different operators but is critical for accurate measurements.
6.3 Breath-hold Duration Reduction Using Pre-saturation
6.3.1 Methods and Results
Pulse Sequence: Myocardial ASL was performed using FAIR-SSFP as described in Chapter 4.
FAIR with an extra RF pulse (FAIRER) [59] was implemented by adding slab-selective
saturation immediately after the inversion pulse, as shown in Figure 6.5. Each ASL scan
consisted of six breath-holds, with one pair of control and tagged images acquired in each breath-
hold. Experiments were performed on a GE Signa 3.0 T EXCITE using a custom pulse sequence,
and 8-channel cardiac array coil.
Saturation Pulse: B
1
-insensitive saturation was achieved using a tailored pulse train [90],
optimized to minimize max|Mz/Mo| at the end of the pulse. Each sub-pulse was a sinc with
86
Figure 6.5. Myocardial ASL pulse sequence of FAIR or FAIRER in each breath-hold. Control
and tagged imaging are separated by T
delay
.
TBW=4 followed by a crusher gradient. The prescribed sub-pulse flip angles of 167°--173°--
121°--119°--102° were optimized for B
1
scale = 0.5 to 0.9 with pulse duration of 21 ms.
Required Delay Between Control and Tagged Images: MBF error due to imperfect static
tissue subtraction was measured by acquiring two control images in each breath-hold (see Figure
6.6). With FAIR, the measured MBF error increased as T
delay
decreased because of incomplete
relaxation of static tissue, and there was an excellent agreement with simulation. MBF error with
FAIRER was relatively independent of T
delay
and the average error was 0.09 ml/g/min, which
supports the use of pre-saturation to reduce breath-hold duration.
slab-sel INV
Fat Sat
Catalyzation
SSFP
IMAG
RR
De-catalyzation
slab-sel SAT
(in FAIRER) nonsel INV
Fat Sat
Catalyzation
SSFP
IMAG
RR
De-catalyzation
slab-sel SAT
(in FAIRER)
Tdelay
Control Tagged
87
Figure 6.6. MBF error due to imperfect static tissue subtraction as a function of time delay
between control and tagged imaging.
Table 6.3. MBF measurements and SD of physiological noise using FAIR with T
delay
= 6 sec and FAIRER
with T
delay
= 0 sec (in ml/g/min).
Scan
FAIR FAIRER
MBF SD of p. noise MBF SD of p. noise
1 1.19 0.088 0.27 0.052
2 1.09 0.058 0.75 0.089
3 0.22 0.207 0.04 0.124
4 0.75 0.024 0.46 0.086
5 0.70 0.236 -0.06 0.061
6 -0.09 0.122 0.16 0.278
7 0.44 0.043 0.04 0.175
Avg. 0.61 0.111 0.24 0.124
MBF error due to static tissue
(ml/g/min)
0
-2
-4
-6
-8
-10
-12
-14
2
FAIR simulation
FAIR
FAIRER
1 2 34 56
Tdelay (s)
0
88
MBF Measurements: MBF measurements were performed using FAIR with T
delay
= 6 s and
FAIRER with T
delay
= 0 s in four healthy volunteers (see Table 6.3). The average MBF was 0.61 ±
0.46 ml/g/min with FAIR and 0.24 ± 0.28 ml/g/min with FAIRER. This difference in
physiological noise was found to be statistically insignificant with p = 0.7908 based on paired t-
test.
6.3.2 Discussion
Shortening the breath-hold duration has potential to reduce unknown temporal variation during
each breath-hold. Using an extra RF saturation pulse, we were able to shorten the duration of
breath-hold from 10-11 sec to 3-4 sec without introducing measurement error. While the
difference in physiological noise with pre-saturation was statistically insignificant, it may be
effective at physiological noise reduction in patients who have difficulty with long breath-holds.
We also noticed a significant difference in the ASL signal between FAIR and FAIRER
acquisitions. One possible explanation is that with FAIR, blood that enters the slice prior to
inversion may be in different states in the control and tagged images, while in FAIRER, the
saturation pulse resets the history of imaging slice and the MBF measurement only reflects the
blood flow that arrives in the imaging slice after inversion. This remains to be verified.
89
Chapter 7
Summary and Future Work
7.1 Summary
This dissertation demonstrates application of ASL in myocardial perfusion imaging at 3T.
Because ASL is more challenging in the heart compared to other stationary tissues, it is important
to utilize more simple and robust ASL tagging technique but with highly SNR-efficient imaging
sequence. Using the proposed sequence, we have demonstrated that myocardial ASL is feasible
and has potential to detect angiographically significant CAD with vasodilatation. We have also
presented analysis of measurement error with respect to thermal and physiological noise to
provide guidance to what extent that MBF can be measured accurately with a certain confidence,
and to demonstrate that physiological noise should be reduced down to thermal noise level. For
physiological noise reduction, we have attempted several methods and obtained promising results
with 2D spatially selective tagging.
90
7.2 Future Work
7.2.1 Extended Spatial Coverage
In perfusion imaging, a large spatial coverage is required for accurate estimation of MBF and its
prognostic value. While we have not utilized acceleration techniques due to SNR loss in these
methods, acceleration can be used to increase the spatial coverage not to reduce the scan time. For
example, the current protocol with single slice imaging can be extended directly to two slices
using two-fold acceleration with SENSE [76] or GRAPPA [33] without loss of SNR. In this case,
two-separate-slice excitation using a cosine-modulated sinc RF pulse will be desired to increase
the diagnostic efficiency. Compressed sensing [57] combined with conventional acceleration
techniques can also be considered to increase the acceleration. 3D imaging, while requiring
higher acceleration, will provide higher coil sensitivity which can be utilized in acceleration
methods.
91
7.2.2 Systolic Imaging
MR image acquisition is typically performed at mid-diastole, which is the longest stationary
cardiac phase. End-systole is the second longest quiescent phase and is suited for MR image
acquisition [29, 85]. It is known to have timing and duration less sensitive to irregular heartbeat.
Myocardial ASL with systolic imaging may reduce physiological noise by minimizing mismatch
between control and tagged images due to gating error. In addition, systolic images will obtain
more number of voxels averaged to suppress thermal noise, and facilitate the detection of non-
transmural perfusion defects. The biggest hurdle for systolic imaging is the short duration, and
this requires the use of acceleration techniques. While acceleration reduces SNR, increased
number of voxels averaged and minimized control-tagged mismatch may, in turn, lower the
physiological noise.
7.2.3 Other Tagging Methods
All the previous works on myocardial ASL including ours used FAIR tagging mainly because
FAIR is among the most robust tagging method. However, myocardial ASL may adopt other
tagging schemes such as velocity selective tagging [100] or pseudocontinuous tagging [18, 101]
that have been well received in brain ASL recently. In velocity selective ASL, tagging is achieved
92
based on the velocity of arterial blood spins, not based on the spatial location. Therefore this
technique reduces the error due to transit delay of tagged blood. Patients with significant
collateral flow to the myocardium will benefit this tagging method. On the other hand,
pseudocontinuous tagging can in principle provide the highest tagging efficiency with roughly
two-fold ASL signal compared to conventional tagging schemes. Myocardial ASL with
pseudocontinuous tagging can achieve doubled SNR but may increase physiological noise due to
irregular pattern of pulsatile blood flow. Spatial and temporal position of inversion plane should
be carefully determined considering arterial blood path in coronaries and pulsatile flow pattern to
maximize tagging efficiency.
7.2.4 Cross-validation with Other Modalities
Myocardial ASL should be compared with other modalities such as PET or microsphere methods
to evaluate quantitation. While there have been quantitation issues with PET, microsphere method
applied in animals is a well-established gold standard in myocardial perfusion imaging. Human-
sized animals with and without pathology would be suited for comparison with microspheres. For
accurate comparison, all the modeling assumption in myocardial ASL should be examined. For
example, if transit delay is found to be critical in myocardial ASL, application of techniques less
sensitive to this such as QUIPSS II [99] may be considered. Note that because the scan sessions
93
for ASL and other modalities can be on different days, comparison will require the same
condition in subjects for both sessions such as no caffeine/food intake prior to scans.
94
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Abstract (if available)
Abstract
Magnetic resonance imaging (MRI) is a powerful imaging modality that is both non-invasive and non-ionizing. MRI can be used to facilitate the evaluation of coronary artery disease (CAD), which is a leading cause of death worldwide. In particular, MRI-based first-pass techniques provide assessment of myocardial perfusion with high resolution in detection of CAD. Myocardial perfusion reflects the rate of blood delivery to tissue and is a powerful indicator of tissue health. However, these first-pass methods require the use of contrast agent which cannot be applied to the patients with end-stage renal disease (ESRD). This dissertation contributes a new method for measuring myocardial perfusion without contrast agent, using arterial spin labeled (ASL) MRI.
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Zun, Zungho
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Core Title
Assessment of myocardial blood flow in humans using arterial spin labeled MRI
School
Viterbi School of Engineering
Degree
Doctor of Philosophy
Degree Program
Electrical Engineering
Publication Date
12/14/2010
Defense Date
09/13/2010
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arterial spin labeling
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