Exploring stem cell pluripotency through long range chromosome interactions 

Genome-wide characterization of the regulatory relationships of cell type-specific enhancer-gene links 

Identification and characterization of cancer-associated enhancers 

Novel statistical and computational methods for analyzing genome variation 

Understanding DNA methylation and nucleosome organization in cancer cells using single molecule sequencing 

Exploring three-dimensional organization of the genome by mapping chromatin contacts and population modeling 

Mapping 3D genome structures: a data driven modeling method for integrated structural analysis 

An analysis of conservation of methylation 

Detecting joint interactions between sets of variables in the context of studies with a dichotomous phenotype, with applications to asthma susceptibility involving epigenetics and epistasis 

Statistical analysis of high-throughput genomic data 

Cell-specific case studies of enhancer function prediction using machine learning 

Using genomics to understand the gene selectivity of steroid hormone receptors 

Review of long noncoding RNAs and chromosome structure 

The mechanisms of somatic cell reprogramming 

Big data analytics in metagenomics: integration, representation, management, and visualization 

The role of Hic-5 in glucocorticoid receptor binding to chromatin 

Two-step testing approaches for detecting quantitative trait gene-environment interactions in a genome-wide association study 

Scalable latent factor models for inferring genetic regulatory networks 

Novel roles for Maf1 in embryonic stem cell differentiation and adipogenesis 

Incorporating prior knowledge into regularized regression