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Application of phylogenetic trees in variant analysis, genome evolution and gene functional annotation
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Essays on bioinformatics and social network analysis: statistical and computational methods for complex systems
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Evaluating the effects of testing framework and annotation updates on gene ontology enrichment analysis
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Patterns of molecular microbial activity across time and biomes
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Aggregatibacter actinomycetemcomitans evolves in vivo in patients with periodontal disease
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Big data analytics in metagenomics: integration, representation, management, and visualization
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Comparative analysis of DNA methylation in mammals
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Using sequencing techniques to explore the microbial communities associated with ferromanganese nodules and sediment from the South Pacific gyre
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Opportunity makes the thief: the omics of microbial ecology
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Using molecular techniques to explore the diversity, ecology and physiology of important protistan species, with an emphasis on the Prymnesiophyceae
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Thesis Draft 74
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Integrative approach of biological systems analysis on regulatory pathways, modules, protein essentialities, and disease gene classification
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Multi-omic data mining to elucidate molecular adaptation mechanisms of filamentous fungi exposed to space environment
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Comparative genomics of translational regulation
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Statistical methods and analyses in the Multiethnic Cohort (MEC) human gut microbiome data
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Genetic diversity and its effect on the scat microbiome in the threatened insular canid, Urocyon littoralis
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Evolutionary genomic analysis in heterogeneous populations of non-model and model organisms
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Microsoft Word - EllaSieradzki_dissertation_full.docx
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Geometric interpretation of biological data: algorithmic solutions for next generation sequencing analysis at massive scale
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Investigating microbial biofilm community mediated processes on surfaces: from single cell genomics to community meta-omics
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