Decoding protein-DNA binding determinants mediated through DNA shape readout 

Genome-wide studies of protein–DNA binding: beyond sequence towards biophysical and physicochemical models 

Understanding protein–DNA recognition in the context of DNA methylation 

The kinetic study of engineered MBD domain interactions with methylated DNA: insight into binding of methylated DNA by MBD2b 

Quantitative modeling of in vivo transcription factor–DNA binding and beyond 

Genome-wide studies reveal the function and evolution of DNA shape 

Site-directed spin labeling studies of sequence-dependent DNA shape and protein-DNA recognition 

Machine learning of DNA shape and spatial geometry 

Profiling transcription factor-DNA binding specificity 

Biochemical characterization and structural analysis of two hexameric helicases for eukaryotic DNA replication 

Data-driven approaches to studying protein-DNA interactions from a structural point of view 

The relationship between DNA methylation and transcription factor binding in colon cancer cells 

Biochemical studies of APOBEC protein family 

The function of Rpd3 in balancing the replicaton initiation of different genomic regions 

X-ray structural studies on DNA-dependent protein kinase catalytic subunit:DNA co-crystals 

Improved methods for the quantification of transcription factor binding using SELEX-seq 

DNA shape at transcription factor binding sites: from purifying selection to a new alphabet 

Simulating the helicase motor of SV40 large tumor antigen 

Vpr-binding protein negatively regulates p53 by site-specific phosphorylation through intrinsic kinase activity 

Identification and characterization of PR-Set7 and histone H4 lysine 20 methylation-associated proteins 

Advancing transcription factor studies: the development of Bi-Functional Photo-crosslinking probe and BioHiChIP assay for enhanced understanding of transcription factor-DNA… 

Characterization of the interaction of nucleotide-binding oligomerization domain, leucine-rich repeat and pyrin domain-containing protein 12 (Nlrp12) with hematopoietic cell kinase (Hck) 

Cellular proteins that interact with the hepatitis C virus F protein 

Investigating the E. Coli DNA polymerase V mutasome 

Computational analysis of DNA replication timing and fork dynamics in S. cerevisiae